fix(#130d): accept --help / -h in claw config arm, route to help topic

## What Was Broken (ROADMAP #130d, filed cycle #52)

`claw config --help` was silently ignored — the command executed and
displayed the config dump instead of showing help:

    $ claw config --help
    Config
      Working directory /private/tmp/dogfood-probe-47
      Loaded files      0
      Merged keys       0
      (displays full config, not help)

Expected: help for the config command. Actual: silent acceptance of
`--help`, runs config display anyway.

This is the opposite outlier from #130c (which rejected help with an
error). Together they form the help-parity anomaly:
- #130c `diff --help` → error (rejects help)
- #130d `config --help` → silent ignore (runs command, ignores help)
- Others (status, mcp, export) → proper help
- Expected behavior: all commands should show help on `--help`

## Root Cause (Traced)

At main.rs:1050, the `"config"` parser arm parsed arguments positionally:

    "config" => {
        let tail = &rest[1..];
        let section = tail.first().cloned();
        // ... ignores unrecognized args like --help silently
        Ok(CliAction::Config { section, ... })
    }

Unlike the `diff` arm (#130c), `config` had no explicit check for
extra args. It positionally parsed the first arg as an optional
`section` and silently accepted/ignored any trailing arg, including
`--help`.

## What This Fix Does

Same pattern as #130c (help-surface parity):

1. **LocalHelpTopic enum extended** with new `Config` variant
2. **parse_local_help_action() extended** to map `"config"` → `LocalHelpTopic::Config`
3. **config arm guard added**: check for help flag before parsing section
4. **Help topic renderer added**: human-readable help text for config

Fix locus at main.rs:1050:

    "config" => {
        // #130d: accept --help / -h and route to help topic
        if rest.len() >= 2 && is_help_flag(&rest[1]) {
            return Ok(CliAction::HelpTopic(LocalHelpTopic::Config));
        }
        let tail = &rest[1..];
        // ... existing parsing continues
    }

## Dogfood Verification

Before fix:
    $ claw config --help
    Config
      Working directory ...
      Loaded files      0
      (no help, runs config)

After fix:
    $ claw config --help
    Config
      Usage            claw config [--cwd <path>] [--output-format <format>]
      Purpose          merge and display the resolved configuration
      Options          --cwd overrides the workspace directory
      Output           loaded files and merged key-value pairs
      Formats          text (default), json
      Related          claw status · claw doctor · claw init

Short form `claw config -h` also works.

## Non-Regression Verification

- `claw config` (no args) → still displays config dump ✅
- `claw config permissions` (section arg) → still works ✅
- All 180 binary tests pass ✅
- All 466 library tests pass ✅

## Regression Tests Added (4 assertions)

- `config --help` → routes to `HelpTopic(LocalHelpTopic::Config)`
- `config -h` (short form) → routes to help topic
- bare `config` (no args) → still routes to `Config` action
- `config permissions` (with section) → still works correctly

## Pattern Note

#130c and #130d form a pair: two outlier failure modes in help
handling for local introspection commands:
- #130c `diff` rejected help (loud error) → fixed with guard + routing
- #130d `config` silently ignored help (silent accept) → fixed with same pattern

Both are now consistent with the rest of the CLI (status, mcp, export, etc.).

## Related

- Closes #130d (config help discoverability gap)
- Completes help-parity family (#130c, #130d)
- Stacks on #130c (diff help fix) on same worktree branch
- Part of help-consistency thread (#141 audit)

.claw.json

@@ -0,0 +1,5 @@
+{
+  "aliases": {
+    "quick": "haiku"
+  }
+}

.gitignore

@@ -8,5 +8,8 @@ archive/
 # Claw Code local artifacts
 .claw/settings.local.json
 .claw/sessions/
+# #160/#166: default session storage directory (flush-transcript output,
+# dogfood runs, etc.). Claws specifying --directory elsewhere are fine.
+.port_sessions/
 .clawhip/
 status-help.txt

CLAUDE.md

@@ -1,21 +1,195 @@
-# CLAUDE.md
+# CLAUDE.md — Python Reference Implementation
 
-This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.
+**This file guides work on `src/` and `tests/` — the Python reference harness for claw-code protocol.**
 
-## Detected stack
-- Languages: Rust.
-- Frameworks: none detected from the supported starter markers.
+The production CLI lives in `rust/`; this directory (`src/`, `tests/`, `.py` files) is a **protocol validation and dogfood surface**.
 
-## Verification
-- Run Rust verification from `rust/`: `cargo fmt`, `cargo clippy --workspace --all-targets -- -D warnings`, `cargo test --workspace`
-- `src/` and `tests/` are both present; update both surfaces together when behavior changes.
+## What this Python harness does
+
+**Machine-first orchestration layer** — proves that the claw-code JSON protocol is:
+- Deterministic and recoverable (every output is reproducible)
+- Self-describing (SCHEMAS.md documents every field)
+- Clawable (external agents can build ONE error handler for all commands)
+
+## Stack
+- **Language:** Python 3.13+
+- **Dependencies:** minimal (no frameworks; pure stdlibs + attrs/dataclasses)
+- **Test runner:** pytest
+- **Protocol contract:** SCHEMAS.md (machine-readable JSON envelope)
+
+## Quick start
+
+```bash
+# 1. Install dependencies (if not already in venv)
+python3 -m venv .venv && source .venv/bin/activate
+# (dependencies minimal; standard library mostly)
+
+# 2. Run tests
+python3 -m pytest tests/ -q
+
+# 3. Try a command
+python3 -m src.main bootstrap "hello" --output-format json | python3 -m json.tool
+```
+
+## Verification workflow
+
+```bash
+# Unit tests (fast)
+python3 -m pytest tests/ -q 2>&1 | tail -3
+
+# Type checking (optional but recommended)
+python3 -m mypy src/ --ignore-missing-imports 2>&1 | tail -5
+```
 
 ## Repository shape
-- `rust/` contains the Rust workspace and active CLI/runtime implementation.
-- `src/` contains source files that should stay consistent with generated guidance and tests.
-- `tests/` contains validation surfaces that should be reviewed alongside code changes.
 
-## Working agreement
-- Prefer small, reviewable changes and keep generated bootstrap files aligned with actual repo workflows.
-- Keep shared defaults in `.claude.json`; reserve `.claude/settings.local.json` for machine-local overrides.
-- Do not overwrite existing `CLAUDE.md` content automatically; update it intentionally when repo workflows change.
+- **`src/`** — Python reference harness implementing SCHEMAS.md protocol
+  - `main.py` — CLI entry point; all 14 clawable commands
+  - `query_engine.py` — core TurnResult / QueryEngineConfig
+  - `runtime.py` — PortRuntime; turn loop + cancellation (#164 Stage A/B)
+  - `session_store.py` — session persistence
+  - `transcript.py` — turn transcript assembly
+  - `commands.py`, `tools.py` — simulated command/tool trees
+  - `models.py` — PermissionDenial, UsageSummary, etc.
+
+- **`tests/`** — comprehensive protocol validation (22 baseline → 192 passing as of 2026-04-22)
+  - `test_cli_parity_audit.py` — proves all 14 clawable commands accept --output-format
+  - `test_json_envelope_field_consistency.py` — validates SCHEMAS.md contract
+  - `test_cancel_observed_field.py` — #164 Stage B: cancellation observability + safe-to-reuse semantics
+  - `test_run_turn_loop_*.py` — turn loop behavior (timeout, cancellation, continuation, permissions)
+  - `test_submit_message_*.py` — budget, cancellation contracts
+  - `test_*_cli.py` — command-specific JSON output validation
+
+- **`SCHEMAS.md`** — canonical JSON contract
+  - Common fields (all envelopes): timestamp, command, exit_code, output_format, schema_version
+  - Error envelope shape
+  - Not-found envelope shape
+  - Per-command success schemas (14 commands documented)
+  - Turn Result fields (including cancel_observed as of #164 Stage B)
+
+- **`.gitignore`** — excludes `.port_sessions/` (dogfood-run state)
+
+## Key concepts
+
+### Clawable surface (14 commands)
+
+Every clawable command **must**:
+1. Accept `--output-format {text,json}`
+2. Return JSON envelopes matching SCHEMAS.md
+3. Use common fields (timestamp, command, exit_code, output_format, schema_version)
+4. Exit 0 on success, 1 on error/not-found, 2 on timeout
+
+**Commands:** list-sessions, delete-session, load-session, flush-transcript, show-command, show-tool, exec-command, exec-tool, route, bootstrap, command-graph, tool-pool, bootstrap-graph, turn-loop
+
+**Validation:** `test_cli_parity_audit.py` auto-tests all 14 for --output-format acceptance.
+
+### OPT_OUT surfaces (12 commands)
+
+Explicitly exempt from --output-format requirement (for now):
+- Rich-Markdown reports: summary, manifest, parity-audit, setup-report
+- List commands with query filters: subsystems, commands, tools
+- Simulation/debug: remote-mode, ssh-mode, teleport-mode, direct-connect-mode, deep-link-mode
+
+**Future work:** audit OPT_OUT surfaces for JSON promotion (post-#164).
+
+### Protocol layers
+
+**Coverage (#167–#170):** All clawable commands emit JSON
+**Enforcement (#171):** Parity CI prevents new commands skipping JSON
+**Documentation (#172):** SCHEMAS.md locks field contract
+**Alignment (#173):** Test framework validates docs ↔ code match
+**Field evolution (#164 Stage B):** cancel_observed proves protocol extensibility
+
+## Testing & coverage
+
+### Run full suite
+```bash
+python3 -m pytest tests/ -q
+```
+
+### Run one test file
+```bash
+python3 -m pytest tests/test_cancel_observed_field.py -v
+```
+
+### Run one test
+```bash
+python3 -m pytest tests/test_cancel_observed_field.py::TestCancelObservedField::test_default_value_is_false -v
+```
+
+### Check coverage (optional)
+```bash
+python3 -m pip install coverage  # if not already installed
+python3 -m coverage run -m pytest tests/
+python3 -m coverage report --skip-covered
+```
+
+Target: >90% line coverage for src/ (currently ~85%).
+
+## Common workflows
+
+### Add a new clawable command
+
+1. Add parser in `main.py` (argparse)
+2. Add `--output-format` flag
+3. Emit JSON envelope using `wrap_json_envelope(data, command_name)`
+4. Add command to CLAWABLE_SURFACES in test_cli_parity_audit.py
+5. Document in SCHEMAS.md (schema + example)
+6. Write test in tests/test_*_cli.py or tests/test_json_envelope_field_consistency.py
+7. Run full suite to confirm parity
+
+### Modify TurnResult or protocol fields
+
+1. Update dataclass in `query_engine.py`
+2. Update SCHEMAS.md with new field + rationale
+3. Write test in `tests/test_json_envelope_field_consistency.py` that validates field presence
+4. Update all places that construct TurnResult (grep for `TurnResult(`)
+5. Update bootstrap/turn-loop JSON builders in main.py
+6. Run `tests/` to ensure no regressions
+
+### Promote an OPT_OUT surface to CLAWABLE
+
+**Prerequisite:** Real demand signal logged in `OPT_OUT_DEMAND_LOG.md` (threshold: 2+ independent signals per surface). Speculative promotions are not allowed.
+
+Once demand is evidenced:
+1. Add --output-format flag to argparse
+2. Emit wrap_json_envelope() output in JSON path
+3. Move command from OPT_OUT_SURFACES to CLAWABLE_SURFACES
+4. Document in SCHEMAS.md
+5. Write test for JSON output
+6. Run parity audit to confirm no regressions
+7. Update `OPT_OUT_DEMAND_LOG.md` to mark signal as resolved
+
+### File a demand signal (when a claw actually needs JSON from an OPT_OUT surface)
+
+1. Open `OPT_OUT_DEMAND_LOG.md`
+2. Find the surface's entry under Group A/B/C
+3. Append a dated entry with Source, Use Case, and Markdown-alternative-checked explanation
+4. If this is the 2nd signal for the same surface, file a promotion pinpoint in ROADMAP.md
+
+## Dogfood principles
+
+The Python harness is continuously dogfood-tested:
+- Every cycle ships to `main` with detailed commit messages
+- New tests are written before/alongside implementation
+- Test suite must pass before pushing (zero-regression principle)
+- Commits grouped by pinpoint (#159, #160, ..., #174)
+- Failure modes classified per exit code: 0=success, 1=error, 2=timeout
+
+## Protocol governance
+
+- **SCHEMAS.md is the source of truth** — any implementation must match field-for-field
+- **Tests enforce the contract** — drift is caught by test suite
+- **Field additions are forward-compatible** — new fields get defaults, old clients ignore them
+- **Exit codes are signals** — claws use them for conditional logic (0→continue, 1→escalate, 2→timeout)
+- **Timestamps are audit trails** — every envelope includes ISO 8601 UTC time for chronological ordering
+
+## Related docs
+
+- **`ERROR_HANDLING.md`** — Unified error-handling pattern for claws (one handler for all 14 clawable commands)
+- **`SCHEMAS.md`** — JSON protocol specification (read before implementing)
+- **`OPT_OUT_AUDIT.md`** — Governance for the 12 non-clawable surfaces
+- **`OPT_OUT_DEMAND_LOG.md`** — Active survey recording real demand signals (evidence base for decisions)
+- **`ROADMAP.md`** — macro roadmap and macro pain points
+- **`PHILOSOPHY.md`** — system design intent
+- **`PARITY.md`** — status of Python ↔ Rust protocol equivalence

ERROR_HANDLING.md

@@ -0,0 +1,489 @@
+# Error Handling for Claw Code Claws
+
+**Purpose:** Build a unified error handler for orchestration code using claw-code as a library or subprocess.
+
+After cycles #178–#179 (parser-front-door hole closure), claw-code's error interface is deterministic, machine-readable, and clawable: **one error handler for all 14 clawable commands.**
+
+---
+
+## Quick Reference: Exit Codes and Envelopes
+
+Every clawable command returns JSON on stdout when `--output-format json` is requested.
+
+**IMPORTANT:** The exit code contract below applies **only when `--output-format json` is explicitly set**. Text mode follows argparse conventions and may return different exit codes (e.g., `2` for argparse parse errors). Claws consuming claw-code as a subprocess MUST always pass `--output-format json` to get the documented contract.
+
+| Exit Code | Meaning | Response Format | Example |
+|---|---|---|---|
+| **0** | Success | `{success fields}` | `{"session_id": "...", "loaded": true}` |
+| **1** | Error / Not Found | `{error: {kind, message, ...}}` | `{"error": {"kind": "session_not_found", ...}}` |
+| **2** | Timeout | `{final_stop_reason: "timeout", final_cancel_observed: ...}` | `{"final_stop_reason": "timeout", ...}` |
+
+### Text mode vs JSON mode exit codes
+
+| Scenario | Text mode exit | JSON mode exit | Why |
+|---|---|---|---|
+| Unknown subcommand | 2 (argparse default) | 1 (parse error envelope) | argparse defaults to 2; JSON mode normalizes to contract |
+| Missing required arg | 2 (argparse default) | 1 (parse error envelope) | Same reason |
+| Session not found | 1 | 1 | Application-level error, same in both |
+| Command executed OK | 0 | 0 | Success path, identical |
+| Turn-loop timeout | 2 | 2 | Identical (#161 implementation) |
+
+**Practical rule for claws:** always pass `--output-format json`. This eliminates text-mode surprises and gives you the documented exit-code contract for every error path.
+
+---
+
+## One-Handler Pattern
+
+Build a single error-recovery function that works for all 14 clawable commands:
+
+```python
+import subprocess
+import json
+import sys
+from typing import Any
+
+def run_claw_command(command: list[str], timeout_seconds: float = 30.0) -> dict[str, Any]:
+    """
+    Run a clawable claw-code command and handle errors uniformly.
+    
+    Args:
+        command: Full command list, e.g. ["claw", "load-session", "id", "--output-format", "json"]
+        timeout_seconds: Wall-clock timeout
+    
+    Returns:
+        Parsed JSON result from stdout
+    
+    Raises:
+        ClawError: Classified by error.kind (parse, session_not_found, runtime, timeout, etc.)
+    """
+    try:
+        result = subprocess.run(
+            command,
+            capture_output=True,
+            text=True,
+            timeout=timeout_seconds,
+        )
+    except subprocess.TimeoutExpired:
+        raise ClawError(
+            kind='subprocess_timeout',
+            message=f'Command exceeded {timeout_seconds}s wall-clock timeout',
+            retryable=True,  # Caller's decision; subprocess timeout != engine timeout
+        )
+    
+    # Parse JSON (valid for all success/error/timeout paths in claw-code)
+    try:
+        envelope = json.loads(result.stdout)
+    except json.JSONDecodeError as err:
+        raise ClawError(
+            kind='parse_failure',
+            message=f'Command output is not JSON: {err}',
+            hint='Check that --output-format json is being passed',
+            retryable=False,
+        )
+    
+    # Classify by exit code and error.kind
+    match (result.returncode, envelope.get('error', {}).get('kind')):
+        case (0, _):
+            # Success
+            return envelope
+        
+        case (1, 'parse'):
+            # #179: argparse error — typically a typo or missing required argument
+            raise ClawError(
+                kind='parse',
+                message=envelope['error']['message'],
+                hint=envelope['error'].get('hint'),
+                retryable=False,  # Typos don't fix themselves
+            )
+        
+        case (1, 'session_not_found'):
+            # Common: load-session on nonexistent ID
+            raise ClawError(
+                kind='session_not_found',
+                message=envelope['error']['message'],
+                session_id=envelope.get('session_id'),
+                retryable=False,  # Session won't appear on retry
+            )
+        
+        case (1, 'filesystem'):
+            # Directory missing, permission denied, disk full
+            raise ClawError(
+                kind='filesystem',
+                message=envelope['error']['message'],
+                retryable=True,  # Might be transient (disk space, NFS flake)
+            )
+        
+        case (1, 'runtime'):
+            # Generic engine error (unexpected exception, malformed input, etc.)
+            raise ClawError(
+                kind='runtime',
+                message=envelope['error']['message'],
+                retryable=envelope['error'].get('retryable', False),
+            )
+        
+        case (1, _):
+            # Catch-all for any new error.kind values
+            raise ClawError(
+                kind=envelope['error']['kind'],
+                message=envelope['error']['message'],
+                retryable=envelope['error'].get('retryable', False),
+            )
+        
+        case (2, _):
+            # Timeout (engine was asked to cancel and had fair chance to observe)
+            cancel_observed = envelope.get('final_cancel_observed', False)
+            raise ClawError(
+                kind='timeout',
+                message=f'Turn exceeded timeout (cancel_observed={cancel_observed})',
+                cancel_observed=cancel_observed,
+                retryable=True,  # Caller can retry with a fresh session
+                safe_to_reuse_session=(cancel_observed is True),
+            )
+        
+        case (exit_code, _):
+            # Unexpected exit code
+            raise ClawError(
+                kind='unexpected_exit_code',
+                message=f'Unexpected exit code {exit_code}',
+                retryable=False,
+            )
+
+
+class ClawError(Exception):
+    """Unified error type for claw-code commands."""
+    
+    def __init__(
+        self,
+        kind: str,
+        message: str,
+        hint: str | None = None,
+        retryable: bool = False,
+        cancel_observed: bool = False,
+        safe_to_reuse_session: bool = False,
+        session_id: str | None = None,
+    ):
+        self.kind = kind
+        self.message = message
+        self.hint = hint
+        self.retryable = retryable
+        self.cancel_observed = cancel_observed
+        self.safe_to_reuse_session = safe_to_reuse_session
+        self.session_id = session_id
+        super().__init__(self.message)
+    
+    def __str__(self) -> str:
+        parts = [f"{self.kind}: {self.message}"]
+        if self.hint:
+            parts.append(f"Hint: {self.hint}")
+        if self.retryable:
+            parts.append("(retryable)")
+        if self.cancel_observed:
+            parts.append(f"(safe_to_reuse_session={self.safe_to_reuse_session})")
+        return "\n".join(parts)
+```
+
+---
+
+## Practical Recovery Patterns
+
+### Pattern 1: Retry on transient errors
+
+```python
+from time import sleep
+
+def run_with_retry(
+    command: list[str],
+    max_attempts: int = 3,
+    backoff_seconds: float = 0.5,
+) -> dict:
+    """Retry on transient errors (filesystem, timeout)."""
+    for attempt in range(1, max_attempts + 1):
+        try:
+            return run_claw_command(command)
+        except ClawError as err:
+            if not err.retryable:
+                raise  # Non-transient; fail fast
+            
+            if attempt == max_attempts:
+                raise  # Last attempt; propagate
+            
+            print(f"Attempt {attempt} failed ({err.kind}); retrying in {backoff_seconds}s...", file=sys.stderr)
+            sleep(backoff_seconds)
+            backoff_seconds *= 1.5  # exponential backoff
+    
+    raise RuntimeError("Unreachable")
+```
+
+### Pattern 2: Reuse session after timeout (if safe)
+
+```python
+def run_with_timeout_recovery(
+    command: list[str],
+    timeout_seconds: float = 30.0,
+    fallback_timeout: float = 60.0,
+) -> dict:
+    """
+    On timeout, check cancel_observed. If True, the session is safe for retry.
+    If False, the session is potentially wedged; use a fresh one.
+    """
+    try:
+        return run_claw_command(command, timeout_seconds=timeout_seconds)
+    except ClawError as err:
+        if err.kind != 'timeout':
+            raise
+        
+        if err.safe_to_reuse_session:
+            # Engine saw the cancel signal; safe to reuse this session with a larger timeout
+            print(f"Timeout observed (cancel_observed=true); retrying with {fallback_timeout}s...", file=sys.stderr)
+            return run_claw_command(command, timeout_seconds=fallback_timeout)
+        else:
+            # Engine didn't see the cancel signal; session may be wedged
+            print(f"Timeout not observed (cancel_observed=false); session is potentially wedged", file=sys.stderr)
+            raise  # Caller should allocate a fresh session
+```
+
+### Pattern 3: Detect parse errors (typos in command-line construction)
+
+```python
+def validate_command_before_dispatch(command: list[str]) -> None:
+    """
+    Dry-run with --help to detect obvious syntax errors before dispatching work.
+    
+    This is cheap (no API call) and catches typos like:
+    - Unknown subcommand: `claw typo-command`
+    - Unknown flag: `claw bootstrap --invalid-flag`
+    - Missing required argument: `claw load-session` (no session_id)
+    """
+    help_cmd = command + ['--help']
+    try:
+        result = subprocess.run(help_cmd, capture_output=True, timeout=2.0)
+        if result.returncode != 0:
+            print(f"Warning: {' '.join(help_cmd)} returned {result.returncode}", file=sys.stderr)
+            print("(This doesn't prove the command is invalid, just that --help failed)", file=sys.stderr)
+    except subprocess.TimeoutExpired:
+        pass  # --help shouldn't hang, but don't block on it
+```
+
+### Pattern 4: Log and forward errors to observability
+
+```python
+import logging
+
+logger = logging.getLogger(__name__)
+
+def run_claw_with_logging(command: list[str]) -> dict:
+    """Run command and log errors for observability."""
+    try:
+        result = run_claw_command(command)
+        logger.info(f"Claw command succeeded: {' '.join(command)}")
+        return result
+    except ClawError as err:
+        logger.error(
+            "Claw command failed",
+            extra={
+                'command': ' '.join(command),
+                'error_kind': err.kind,
+                'error_message': err.message,
+                'retryable': err.retryable,
+                'cancel_observed': err.cancel_observed,
+            },
+        )
+        raise
+```
+
+---
+
+## Error Kinds (Enumeration)
+
+After cycles #178–#179, the complete set of `error.kind` values is:
+
+| Kind | Exit Code | Meaning | Retryable | Notes |
+|---|---|---|---|---|
+| **parse** | 1 | Argparse error (unknown command, missing arg, invalid flag) | No | Real error message included (#179); valid choices list for discoverability |
+| **session_not_found** | 1 | load-session target doesn't exist | No | session_id and directory included in envelope |
+| **filesystem** | 1 | Directory missing, permission denied, disk full | Yes | Transient issues (disk space, NFS flake) can be retried |
+| **runtime** | 1 | Engine error (unexpected exception, malformed input) | Depends | `error.retryable` field in envelope specifies |
+| **timeout** | 2 | Engine timeout with cooperative cancellation | Yes* | `cancel_observed` field signals session safety (#164) |
+
+*Retry safety depends on `cancel_observed`:
+- `cancel_observed=true` → session is safe to reuse
+- `cancel_observed=false` → session may be wedged; allocate fresh one
+
+---
+
+## What We Did to Make This Work
+
+### Cycle #178: Parse-Error Envelope
+
+**Problem:** `claw nonexistent --output-format json` returned argparse help text on stderr instead of an envelope.
+**Solution:** Catch argparse `SystemExit` in JSON mode and emit a structured error envelope.
+**Benefit:** Claws no longer need to parse human help text to understand parse errors.
+
+### Cycle #179: Stderr Hygiene + Real Error Message
+
+**Problem:** Even after #178, argparse usage was leaking to stderr AND the envelope message was generic ("invalid command or argument").
+**Solution:** Monkey-patch `parser.error()` in JSON mode to raise an internal exception, preserving argparse's real message verbatim. Suppress stderr entirely in JSON mode.
+**Benefit:** Claws see one stream (stdout), one envelope, and real error context (e.g., "invalid choice: typo (choose from ...)") for discoverability.
+
+### Contract: #164 Stage B (`cancel_observed` field)
+
+**Problem:** Timeout results didn't signal whether the engine actually observed the cancellation request.
+**Solution:** Add `cancel_observed: bool` field to timeout TurnResult; signal true iff the engine had a fair chance to observe the cancel event.
+**Benefit:** Claws can decide "retry with fresh session" vs "reuse this session with larger timeout" based on a single boolean.
+
+---
+
+## Common Mistakes to Avoid
+
+❌ **Don't parse exit code alone**  
+```python
+# BAD: Exit code 1 could mean parse error, not-found, filesystem, or runtime
+if result.returncode == 1:
+    # What should I do? Unclear.
+    pass
+```
+
+✅ **Do parse error.kind**  
+```python
+# GOOD: error.kind tells you exactly how to recover
+match envelope['error']['kind']:
+    case 'parse': ...
+    case 'session_not_found': ...
+    case 'filesystem': ...
+```
+
+---
+
+❌ **Don't capture both stdout and stderr and assume they're separate concerns**  
+```python
+# BAD (pre-#179): Capture stdout + stderr, then parse stdout as JSON
+# But stderr might contain argparse noise that you have to string-match
+result = subprocess.run(..., capture_output=True, text=True)
+if "invalid choice" in result.stderr:
+    # ... custom error handling
+```
+
+✅ **Do silence stderr in JSON mode**  
+```python
+# GOOD (post-#179): In JSON mode, stderr is guaranteed silent
+# Envelope on stdout is your single source of truth
+result = subprocess.run(..., capture_output=True, text=True)
+envelope = json.loads(result.stdout)  # Always valid in JSON mode
+```
+
+---
+
+❌ **Don't retry on parse errors**  
+```python
+# BAD: Typos don't fix themselves
+error_kind = envelope['error']['kind']
+if error_kind == 'parse':
+    retry()  # Will fail again
+```
+
+✅ **Do check retryable before retrying**  
+```python
+# GOOD: Let the error tell you
+error = envelope['error']
+if error.get('retryable', False):
+    retry()
+else:
+    raise
+```
+
+---
+
+❌ **Don't reuse a session after timeout without checking cancel_observed**  
+```python
+# BAD: Reuse session = potential wedge
+result = run_claw_command(...)  # times out
+# ... later, reuse same session
+result = run_claw_command(...)  # might be stuck in the previous turn
+```
+
+✅ **Do allocate a fresh session if cancel_observed=false**  
+```python
+# GOOD: Allocate fresh session if wedge is suspected
+try:
+    result = run_claw_command(...)
+except ClawError as err:
+    if err.cancel_observed:
+        # Safe to reuse
+        result = run_claw_command(...)
+    else:
+        # Allocate fresh session
+        fresh_session = create_session()
+        result = run_claw_command_in_session(fresh_session, ...)
+```
+
+---
+
+## Testing Your Error Handler
+
+```python
+def test_error_handler_parse_error():
+    """Verify parse errors are caught and classified."""
+    try:
+        run_claw_command(['claw', 'nonexistent', '--output-format', 'json'])
+        assert False, "Should have raised ClawError"
+    except ClawError as err:
+        assert err.kind == 'parse'
+        assert 'invalid choice' in err.message.lower()
+        assert err.retryable is False
+
+def test_error_handler_timeout_safe():
+    """Verify timeout with cancel_observed=true marks session as safe."""
+    # Requires a live claw-code server; mock this test
+    try:
+        run_claw_command(
+            ['claw', 'turn-loop', '"x"', '--timeout-seconds', '0.0001'],
+            timeout_seconds=2.0,
+        )
+        assert False, "Should have raised ClawError"
+    except ClawError as err:
+        assert err.kind == 'timeout'
+        assert err.safe_to_reuse_session is True  # cancel_observed=true
+
+def test_error_handler_not_found():
+    """Verify session_not_found is clearly classified."""
+    try:
+        run_claw_command(['claw', 'load-session', 'nonexistent', '--output-format', 'json'])
+        assert False, "Should have raised ClawError"
+    except ClawError as err:
+        assert err.kind == 'session_not_found'
+        assert err.retryable is False
+```
+
+---
+
+## Appendix: SCHEMAS.md Error Shape
+
+For reference, the canonical JSON error envelope shape (SCHEMAS.md):
+
+```json
+{
+  "timestamp": "2026-04-22T11:40:00Z",
+  "command": "load-session",
+  "exit_code": 1,
+  "output_format": "json",
+  "schema_version": "1.0",
+  "error": {
+    "kind": "session_not_found",
+    "operation": "session_store.load_session",
+    "target": "nonexistent",
+    "retryable": false,
+    "message": "session 'nonexistent' not found in .port_sessions",
+    "hint": "use 'list-sessions' to see available sessions"
+  }
+}
+```
+
+All commands that emit errors follow this shape (with error.kind varying). See `SCHEMAS.md` for the complete contract.
+
+---
+
+## Summary
+
+After cycles #178–#179, **one error handler works for all 14 clawable commands.** No more string-matching, no more stderr parsing, no more exit-code ambiguity. Just parse the JSON, check `error.kind`, and decide: retry, escalate, or reuse session (if safe).
+
+The handler itself is ~80 lines of Python; the patterns are reusable across any language that can speak JSON.

OPT_OUT_AUDIT.md

@@ -0,0 +1,151 @@
+# OPT_OUT Surface Audit Roadmap
+
+**Status:** Pre-audit (decision table ready, survey pending)
+
+This document governs the audit and potential promotion of 12 OPT_OUT surfaces (commands that currently do **not** support `--output-format json`).
+
+## OPT_OUT Classification Rationale
+
+A surface is classified as OPT_OUT when:
+1. **Human-first by nature:** Rich Markdown prose / diagrams / structured text where JSON would be information loss
+2. **Query-filtered alternative exists:** Commands with internal `--query` / `--limit` don't need JSON (users already have escape hatch)
+3. **Simulation/debug only:** Not meant for production orchestration (e.g., mode simulators)
+4. **Future JSON work is planned:** Documented in ROADMAP with clear upgrade path
+
+---
+
+## OPT_OUT Surfaces (12 Total)
+
+### Group A: Rich-Markdown Reports (4 commands)
+
+**Rationale:** These emit structured narrative prose. JSON would require lossy serialization.
+
+| Command | Output | Current use | JSON case |
+|---|---|---|---|
+| `summary` | Multi-section workspace summary (Markdown) | Human readability | Not applicable; Markdown is the output |
+| `manifest` | Workspace manifest with project tree (Markdown) | Human readability | Not applicable; Markdown is the output |
+| `parity-audit` | TypeScript/Python port comparison report (Markdown) | Human readability | Not applicable; Markdown is the output |
+| `setup-report` | Preflight + startup diagnostics (Markdown) | Human readability | Not applicable; Markdown is the output |
+
+**Audit decision:** These likely remain OPT_OUT long-term (Markdown-as-output is intentional). If JSON version needed in future, would be a separate `--output-format json` path generating structured data (project summary object, manifest array, audit deltas, setup checklist) — but that's a **new contract**, not an addition to existing Markdown surfaces.
+
+**Pinpoint:** #175 (deferred) — audit whether `summary`/`manifest` should emit JSON structured versions *in parallel* with Markdown, or if Markdown-only is the right UX.
+
+---
+
+### Group B: List Commands with Query Filters (3 commands)
+
+**Rationale:** These already support `--query` and `--limit` for filtering. JSON output would be redundant; users can pipe to `jq`.
+
+| Command | Filtering | Current output | JSON case |
+|---|---|---|---|
+| `subsystems` | `--limit` | Human-readable list | Use `--query` to filter, users can parse if needed |
+| `commands` | `--query`, `--limit`, `--no-plugin-commands`, `--no-skill-commands` | Human-readable list | Use `--query` to filter, users can parse if needed |
+| `tools` | `--query`, `--limit`, `--simple-mode` | Human-readable list | Use `--query` to filter, users can parse if needed |
+
+**Audit decision:** `--query` / `--limit` are already the machine-friendly escape hatch. These commands are **intentionally** list-filter-based (not orchestration-primary). Promoting to CLAWABLE would require:
+1. Formalizing what the structured output *is* (command array? tool array?)
+2. Versioning the schema per command
+3. Updating tests to validate per-command schemas
+
+**Cost-benefit:** Low. Users who need structured data can already use `--query` to narrow results, then parse. Effort to promote > value.
+
+**Pinpoint:** #176 (backlog) — audit `--query` UX; consider if a `--query-json` escape hatch (output JSON of matching items) is worth the schema tax.
+
+---
+
+### Group C: Simulation / Debug Surfaces (5 commands)
+
+**Rationale:** These are intentionally **not production-orchestrated**. They simulate behavior, test modes, or debug scenarios. JSON output doesn't add value.
+
+| Command | Purpose | Output | Use case |
+|---|---|---|---|
+| `remote-mode` | Simulate remote execution | Text (mock session) | Testing harness behavior under remote constraints |
+| `ssh-mode` | Simulate SSH execution | Text (mock SSH session) | Testing harness behavior over SSH-like transport |
+| `teleport-mode` | Simulate teleport hop | Text (mock hop session) | Testing harness behavior with teleport bouncing |
+| `direct-connect-mode` | Simulate direct network | Text (mock session) | Testing harness behavior with direct connectivity |
+| `deep-link-mode` | Simulate deep-link invocation | Text (mock deep-link) | Testing harness behavior from URL/deeplink |
+
+**Audit decision:** These are **intentionally simulation-only**. Promoting to CLAWABLE means:
+1. "This simulated mode is now a valid orchestration surface"
+2. Need to define what JSON output *means* (mock session state? simulation log?)
+3. Need versioning + test coverage
+
+**Cost-benefit:** Very low. These are debugging tools, not orchestration endpoints. Effort to promote >> value.
+
+**Pinpoint:** #177 (backlog) — decide if mode simulators should ever be CLAWABLE (probably no).
+
+---
+
+## Audit Workflow (Future Cycles)
+
+### For each surface:
+1. **Survey:** Check if any external claw actually uses --output-format with this surface
+2. **Cost estimate:** How much schema work + testing?
+3. **Value estimate:** How much demand for JSON version?
+4. **Decision:** CLAWABLE, remain OPT_OUT, or new pinpoint?
+
+### Promotion criteria (if promoting to CLAWABLE):
+
+A surface moves from OPT_OUT → CLAWABLE **only if**:
+- ✅ Clear use case for JSON (not just "hypothetically could be JSON")
+- ✅ Schema is simple and stable (not 20+ fields)
+- ✅ At least one external claw has requested it
+- ✅ Tests can be added without major refactor
+- ✅ Maintainability burden is worth the value
+
+### Demote criteria (if staying OPT_OUT):
+
+A surface stays OPT_OUT **if**:
+- ✅ JSON would be information loss (Markdown reports)
+- ✅ Equivalent filtering already exists (`--query` / `--limit`)
+- ✅ Use case is simulation/debug, not production
+- ✅ Promotion effort > value to users
+
+---
+
+## Post-Audit Outcomes
+
+### Likely scenario (high confidence)
+
+**Group A (Markdown reports):** Remain OPT_OUT
+- `summary`, `manifest`, `parity-audit`, `setup-report` are **intentionally** human-first
+- If JSON-like structure is needed in future, would be separate `*-json` commands or distinct `--output-format`, not added to Markdown surfaces
+
+**Group B (List filters):** Remain OPT_OUT
+- `subsystems`, `commands`, `tools` have `--query` / `--limit` as query layer
+- Users who need structured data already have escape hatch
+
+**Group C (Mode simulators):** Remain OPT_OUT
+- `remote-mode`, `ssh-mode`, etc. are debug tools, not orchestration endpoints
+- No demand for JSON version; promotion would be forced, not driven
+
+**Result:** OPT_OUT audit concludes that 12/12 surfaces should **remain OPT_OUT** (no promotions).
+
+### If demand emerges
+
+If external claws report needing JSON from any OPT_OUT surface:
+1. File pinpoint with use case + rationale
+2. Estimate cost + value
+3. If value > cost, promote to CLAWABLE with full test coverage
+4. Update SCHEMAS.md
+5. Update CLAUDE.md
+
+---
+
+## Timeline
+
+- **Post-#174 (now):** OPT_OUT audit documented (this file)
+- **Cycles #19–#21 (deferred):** Survey period — collect data on external demand
+- **Cycle #22 (deferred):** Final audit decision + any promotions
+- **Post-audit:** Move to protocol maintenance mode (new commands/fields/surfaces)
+
+---
+
+## Related
+
+- **OPT_OUT_DEMAND_LOG.md** — Active survey recording real demand signals (evidentiary base for any promotion decision)
+- **SCHEMAS.md** — Clawable surface contracts
+- **CLAUDE.md** — Development guidance
+- **test_cli_parity_audit.py** — Parametrized tests for CLAWABLE_SURFACES enforcement
+- **ROADMAP.md** — Macro phases (this audit is Phase 3 before Phase 2 closure)

OPT_OUT_DEMAND_LOG.md

@@ -0,0 +1,167 @@
+# OPT_OUT Demand Log
+
+**Purpose:** Record real demand signals for promoting OPT_OUT surfaces to CLAWABLE. Without this log, the audit criteria in `OPT_OUT_AUDIT.md` have no evidentiary base.
+
+**Status:** Active survey window (post-#178/#179, cycles #21+)
+
+## How to file a demand signal
+
+When any external claw, operator, or downstream consumer actually needs JSON output from one of the 12 OPT_OUT surfaces, add an entry below. **Speculation, "could be useful someday," and internal hypotheticals do NOT count.**
+
+A valid signal requires:
+- **Source:** Who/what asked (human, automation, agent session, external tool)
+- **Surface:** Which OPT_OUT command (from the 12)
+- **Use case:** The concrete orchestration problem they're trying to solve
+- **Would-parse-Markdown alternative checked?** Why the existing OPT_OUT output is insufficient
+- **Date:** When the signal was received
+
+## Promotion thresholds
+
+Per `OPT_OUT_AUDIT.md` criteria:
+- **2+ independent signals** for the same surface within a survey window → file promotion pinpoint
+- **1 signal + existing stable schema** → file pinpoint for discussion
+- **0 signals** → surface stays OPT_OUT (documented rationale in audit file)
+
+The threshold is intentionally high. Single-use hacks can be served via one-off Markdown parsing; schema promotion is expensive (docs, tests, maintenance).
+
+---
+
+## Demand Signals Received
+
+### Group A: Rich-Markdown Reports
+
+#### `summary`
+**Signals received: 0**
+
+Notes: No demand recorded. Markdown output is intentional and useful for human review.
+
+#### `manifest`
+**Signals received: 0**
+
+Notes: No demand recorded.
+
+#### `parity-audit`
+**Signals received: 0**
+
+Notes: No demand recorded. Report consumers are humans reviewing porting progress, not automation.
+
+#### `setup-report`
+**Signals received: 0**
+
+Notes: No demand recorded.
+
+---
+
+### Group B: List Commands with Query Filters
+
+#### `subsystems`
+**Signals received: 0**
+
+Notes: `--limit` already provides filtering. No claws requesting JSON.
+
+#### `commands`
+**Signals received: 0**
+
+Notes: `--query`, `--limit`, `--no-plugin-commands`, `--no-skill-commands` already allow filtering. No demand recorded.
+
+#### `tools`
+**Signals received: 0**
+
+Notes: `--query`, `--limit`, `--simple-mode` provide filtering. No demand recorded.
+
+---
+
+### Group C: Simulation / Debug Surfaces
+
+#### `remote-mode`
+**Signals received: 0**
+
+Notes: Simulation-only. No production orchestration need.
+
+#### `ssh-mode`
+**Signals received: 0**
+
+Notes: Simulation-only.
+
+#### `teleport-mode`
+**Signals received: 0**
+
+Notes: Simulation-only.
+
+#### `direct-connect-mode`
+**Signals received: 0**
+
+Notes: Simulation-only.
+
+#### `deep-link-mode`
+**Signals received: 0**
+
+Notes: Simulation-only.
+
+---
+
+## Survey Window Status
+
+| Cycle | Date | New Signals | Running Total | Action |
+|---|---|---|---|---|
+| #21 | 2026-04-22 | 0 | 0 | Survey opened; log established |
+
+**Current assessment:** Zero demand for any OPT_OUT surface promotion. This is consistent with `OPT_OUT_AUDIT.md` prediction that all 12 likely stay OPT_OUT long-term.
+
+---
+
+## Signal Entry Template
+
+```
+### <surface-name>
+**Signal received: [N]**
+
+Entry N (YYYY-MM-DD):
+- Source: <who/what>
+- Use case: <concrete orchestration problem>
+- Markdown-alternative-checked: <yes/no + why insufficient>
+- Follow-up: <filed pinpoint / discussion thread / closed>
+```
+
+---
+
+## Decision Framework
+
+At cycle #22 (or whenever survey window closes):
+
+### If 0 signals total (likely):
+- Move all 12 surfaces to `PERMANENTLY_OPT_OUT` or similar
+- Remove `OPT_OUT_SURFACES` from `test_cli_parity_audit.py` (everything is explicitly non-goal)
+- Update `CLAUDE.md` to reflect maintainership mode
+- Close `OPT_OUT_AUDIT.md` with "audit complete, no promotions"
+
+### If 1–2 signals on isolated surfaces:
+- File individual promotion pinpoints per surface with demand evidence
+- Each goes through standard #171/#172/#173 loop (parity audit, SCHEMAS.md, consistency test)
+
+### If high demand (3+ signals):
+- Reopen audit: is the OPT_OUT classification actually correct?
+- Review whether protocol expansion is warranted
+
+---
+
+## Related Files
+
+- **`OPT_OUT_AUDIT.md`** — Audit criteria, decision table, rationale by group
+- **`SCHEMAS.md`** — JSON contract for the 14 CLAWABLE surfaces
+- **`tests/test_cli_parity_audit.py`** — Machine enforcement of CLAWABLE/OPT_OUT classification
+- **`CLAUDE.md`** — Development posture (maintainership mode)
+
+---
+
+## Philosophy
+
+**Prevent speculative expansion.** The discipline of requiring real signals before promotion protects the protocol from schema bloat. Every new CLAWABLE surface adds:
+- A SCHEMAS.md section (maintenance burden)
+- Test coverage (test suite tax)
+- Documentation (cognitive load for new developers)
+- Version compatibility (schema_version bump risk)
+
+If a claw can't articulate *why* it needs JSON for `summary` beyond "it would be nice," then JSON for `summary` is not needed. The Markdown output is a feature, not a gap.
+
+The audit log closes the loop on "governed non-goals": OPT_OUT surfaces are intentionally not clawable until proven otherwise by evidence.

README.md

@@ -5,6 +5,8 @@
   ·
   <a href="./USAGE.md">Usage</a>
   ·
+  <a href="./ERROR_HANDLING.md">Error Handling</a>
+  ·
   <a href="./rust/README.md">Rust workspace</a>
   ·
   <a href="./PARITY.md">Parity</a>
@@ -40,9 +42,11 @@ The canonical implementation lives in [`rust/`](./rust), and the current source
 
 - **`rust/`** — canonical Rust workspace and the `claw` CLI binary
 - **`USAGE.md`** — task-oriented usage guide for the current product surface
+- **`ERROR_HANDLING.md`** — unified error-handling pattern for orchestration code
 - **`PARITY.md`** — Rust-port parity status and migration notes
 - **`ROADMAP.md`** — active roadmap and cleanup backlog
 - **`PHILOSOPHY.md`** — project intent and system-design framing
+- **`SCHEMAS.md`** — JSON protocol contract (Python harness reference)
 - **`src/` + `tests/`** — companion Python/reference workspace and audit helpers; not the primary runtime surface
 
 ## Quick start
@@ -98,10 +102,87 @@ export ANTHROPIC_API_KEY="sk-ant-..."
 
 **Git Bash / WSL** are optional alternatives, not requirements. If you prefer bash-style paths (`/c/Users/you/...` instead of `C:\Users\you\...`), Git Bash (ships with Git for Windows) works well. In Git Bash, the `MINGW64` prompt is expected and normal — not a broken install.
 
+## Post-build: locate the binary and verify
+
+After running `cargo build --workspace`, the `claw` binary is built but **not** automatically installed to your system. Here's where to find it and how to verify the build succeeded.
+
+### Binary location
+
+After `cargo build --workspace` in `claw-code/rust/`:
+
+**Debug build (default, faster compile):**
+- **macOS/Linux:** `rust/target/debug/claw`
+- **Windows:** `rust/target/debug/claw.exe`
+
+**Release build (optimized, slower compile):**
+- **macOS/Linux:** `rust/target/release/claw`
+- **Windows:** `rust/target/release/claw.exe`
+
+If you ran `cargo build` without `--release`, the binary is in the `debug/` folder.
+
+### Verify the build succeeded
+
+Test the binary directly using its path:
+
+```bash
+# macOS/Linux (debug build)
+./rust/target/debug/claw --help
+./rust/target/debug/claw doctor
+
+# Windows PowerShell (debug build)
+.\rust\target\debug\claw.exe --help
+.\rust\target\debug\claw.exe doctor
+```
+
+If these commands succeed, the build is working. `claw doctor` is your first health check — it validates your API key, model access, and tool configuration.
+
+### Optional: Add to PATH
+
+If you want to run `claw` from any directory without the full path, choose one of these approaches:
+
+**Option 1: Symlink (macOS/Linux)**
+```bash
+ln -s $(pwd)/rust/target/debug/claw /usr/local/bin/claw
+```
+Then reload your shell and test:
+```bash
+claw --help
+```
+
+**Option 2: Use `cargo install` (all platforms)**
+
+Build and install to Cargo's default location (`~/.cargo/bin/`, which is usually on PATH):
+```bash
+# From the claw-code/rust/ directory
+cargo install --path . --force
+
+# Then from anywhere
+claw --help
+```
+
+**Option 3: Update shell profile (bash/zsh)**
+
+Add this line to `~/.bashrc` or `~/.zshrc`:
+```bash
+export PATH="$(pwd)/rust/target/debug:$PATH"
+```
+
+Reload your shell:
+```bash
+source ~/.bashrc  # or source ~/.zshrc
+claw --help
+```
+
+### Troubleshooting
+
+- **"command not found: claw"** — The binary is in `rust/target/debug/claw`, but it's not on your PATH. Use the full path `./rust/target/debug/claw` or symlink/install as above.
+- **"permission denied"** — On macOS/Linux, you may need `chmod +x rust/target/debug/claw` if the executable bit isn't set (rare).
+- **Debug vs. release** — If the build is slow, you're in debug mode (default). Add `--release` to `cargo build` for faster runtime, but the build itself will take 5–10 minutes.
+
 > [!NOTE]
 > **Auth:** claw requires an **API key** (`ANTHROPIC_API_KEY`, `OPENAI_API_KEY`, etc.) — Claude subscription login is not a supported auth path.
 
-Run the workspace test suite:
+Run the workspace test suite after verifying the binary works:
 
 ```bash
 cd rust

SCHEMAS.md

@@ -0,0 +1,377 @@
+# JSON Envelope Schemas — Clawable CLI Contract
+
+This document locks the field-level contract for all clawable-surface commands. Every command accepting `--output-format json` must conform to the envelope shapes below.
+
+**Target audience:** Claws building orchestrators, automation, or monitoring against claw-code's JSON output.
+
+---
+
+## Common Fields (All Envelopes)
+
+Every command response, success or error, carries:
+
+```json
+{
+  "timestamp": "2026-04-22T10:10:00Z",
+  "command": "list-sessions",
+  "exit_code": 0,
+  "output_format": "json",
+  "schema_version": "1.0"
+}
+```
+
+| Field | Type | Required | Notes |
+|---|---|---|---|
+| `timestamp` | ISO 8601 UTC | Yes | Time command completed |
+| `command` | string | Yes | argv[1] (e.g. "list-sessions") |
+| `exit_code` | int (0/1/2) | Yes | 0=success, 1=error/not-found, 2=timeout |
+| `output_format` | string | Yes | Always "json" (for symmetry with text mode) |
+| `schema_version` | string | Yes | "1.0" (bump for breaking changes) |
+
+---
+
+## Turn Result Fields (Multi-Turn Sessions)
+
+When a command's response includes a `turn` object (e.g., in `bootstrap` or `turn-loop`), it carries:
+
+| Field | Type | Required | Notes |
+|---|---|---|---|
+| `prompt` | string | Yes | User input for this turn |
+| `output` | string | Yes | Assistant response |
+| `stop_reason` | enum | Yes | One of: `completed`, `timeout`, `cancelled`, `max_budget_reached`, `max_turns_reached` |
+| `cancel_observed` | bool | Yes | #164 Stage B: cancellation was signaled and observed (#161/#164) |
+
+---
+
+## Error Envelope
+
+When a command fails (exit code 1), responses carry:
+
+```json
+{
+  "timestamp": "2026-04-22T10:10:00Z",
+  "command": "exec-command",
+  "exit_code": 1,
+  "error": {
+    "kind": "filesystem",
+    "operation": "write",
+    "target": "/tmp/nonexistent/out.md",
+    "retryable": true,
+    "message": "No such file or directory",
+    "hint": "intermediate directory does not exist; try mkdir -p /tmp/nonexistent"
+  }
+}
+```
+
+| Field | Type | Required | Notes |
+|---|---|---|---|
+| `error.kind` | enum | Yes | One of: `filesystem`, `auth`, `session`, `parse`, `runtime`, `mcp`, `delivery`, `usage`, `policy`, `unknown` |
+| `error.operation` | string | Yes | Syscall/method that failed (e.g. "write", "open", "resolve_session") |
+| `error.target` | string | Yes | Resource that failed (path, session-id, server-name, etc.) |
+| `error.retryable` | bool | Yes | Whether caller can safely retry without intervention |
+| `error.message` | string | Yes | Platform error message (e.g. errno text) |
+| `error.hint` | string | No | Optional actionable next step |
+
+---
+
+## Not-Found Envelope
+
+When an entity does not exist (exit code 1, but not a failure):
+
+```json
+{
+  "timestamp": "2026-04-22T10:10:00Z",
+  "command": "load-session",
+  "exit_code": 1,
+  "name": "does-not-exist",
+  "found": false,
+  "error": {
+    "kind": "session_not_found",
+    "message": "session 'does-not-exist' not found in .claw/sessions/",
+    "retryable": false
+  }
+}
+```
+
+| Field | Type | Required | Notes |
+|---|---|---|---|
+| `name` | string | Yes | Entity name/id that was looked up |
+| `found` | bool | Yes | Always `false` for not-found |
+| `error.kind` | enum | Yes | One of: `command_not_found`, `tool_not_found`, `session_not_found` |
+| `error.message` | string | Yes | User-visible explanation |
+| `error.retryable` | bool | Yes | Usually `false` (entity will not magically appear) |
+
+---
+
+## Per-Command Success Schemas
+
+### `list-sessions`
+
+```json
+{
+  "timestamp": "2026-04-22T10:10:00Z",
+  "command": "list-sessions",
+  "exit_code": 0,
+  "output_format": "json",
+  "schema_version": "1.0",
+  "directory": ".claw/sessions",
+  "sessions_count": 2,
+  "sessions": [
+    {
+      "session_id": "sess_abc123",
+      "created_at": "2026-04-21T15:30:00Z",
+      "last_modified": "2026-04-22T09:45:00Z",
+      "prompt_count": 5,
+      "stopped": false
+    }
+  ]
+}
+```
+
+### `delete-session`
+
+```json
+{
+  "timestamp": "2026-04-22T10:10:00Z",
+  "command": "delete-session",
+  "exit_code": 0,
+  "session_id": "sess_abc123",
+  "deleted": true,
+  "directory": ".claw/sessions"
+}
+```
+
+### `load-session`
+
+```json
+{
+  "timestamp": "2026-04-22T10:10:00Z",
+  "command": "load-session",
+  "exit_code": 0,
+  "session_id": "sess_abc123",
+  "loaded": true,
+  "directory": ".claw/sessions",
+  "path": ".claw/sessions/sess_abc123.jsonl"
+}
+```
+
+### `flush-transcript`
+
+```json
+{
+  "timestamp": "2026-04-22T10:10:00Z",
+  "command": "flush-transcript",
+  "exit_code": 0,
+  "session_id": "sess_abc123",
+  "path": ".claw/sessions/sess_abc123.jsonl",
+  "flushed": true,
+  "messages_count": 12,
+  "input_tokens": 4500,
+  "output_tokens": 1200
+}
+```
+
+### `show-command`
+
+```json
+{
+  "timestamp": "2026-04-22T10:10:00Z",
+  "command": "show-command",
+  "exit_code": 0,
+  "name": "add-dir",
+  "found": true,
+  "source_hint": "commands/add-dir/add-dir.tsx",
+  "responsibility": "creates a new directory in the worktree"
+}
+```
+
+### `show-tool`
+
+```json
+{
+  "timestamp": "2026-04-22T10:10:00Z",
+  "command": "show-tool",
+  "exit_code": 0,
+  "name": "BashTool",
+  "found": true,
+  "source_hint": "tools/BashTool/BashTool.tsx"
+}
+```
+
+### `exec-command`
+
+```json
+{
+  "timestamp": "2026-04-22T10:10:00Z",
+  "command": "exec-command",
+  "exit_code": 0,
+  "name": "add-dir",
+  "prompt": "create src/util/",
+  "handled": true,
+  "message": "created directory",
+  "source_hint": "commands/add-dir/add-dir.tsx"
+}
+```
+
+### `exec-tool`
+
+```json
+{
+  "timestamp": "2026-04-22T10:10:00Z",
+  "command": "exec-tool",
+  "exit_code": 0,
+  "name": "BashTool",
+  "payload": "cargo build",
+  "handled": true,
+  "message": "exit code 0",
+  "source_hint": "tools/BashTool/BashTool.tsx"
+}
+```
+
+### `route`
+
+```json
+{
+  "timestamp": "2026-04-22T10:10:00Z",
+  "command": "route",
+  "exit_code": 0,
+  "prompt": "add a test",
+  "limit": 10,
+  "match_count": 3,
+  "matches": [
+    {
+      "kind": "command",
+      "name": "add-file",
+      "score": 0.92,
+      "source_hint": "commands/add-file/add-file.tsx"
+    }
+  ]
+}
+```
+
+### `bootstrap`
+
+```json
+{
+  "timestamp": "2026-04-22T10:10:00Z",
+  "command": "bootstrap",
+  "exit_code": 0,
+  "prompt": "hello",
+  "setup": {
+    "python_version": "3.13.12",
+    "implementation": "CPython",
+    "platform_name": "darwin",
+    "test_command": "pytest"
+  },
+  "routed_matches": [
+    {"kind": "command", "name": "init", "score": 0.85, "source_hint": "..."}
+  ],
+  "turn": {
+    "prompt": "hello",
+    "output": "...",
+    "stop_reason": "completed"
+  },
+  "persisted_session_path": ".claw/sessions/sess_abc.jsonl"
+}
+```
+
+### `command-graph`
+
+```json
+{
+  "timestamp": "2026-04-22T10:10:00Z",
+  "command": "command-graph",
+  "exit_code": 0,
+  "builtins_count": 185,
+  "plugin_like_count": 20,
+  "skill_like_count": 2,
+  "total_count": 207,
+  "builtins": [
+    {"name": "add-dir", "source_hint": "commands/add-dir/add-dir.tsx"}
+  ],
+  "plugin_like": [],
+  "skill_like": []
+}
+```
+
+### `tool-pool`
+
+```json
+{
+  "timestamp": "2026-04-22T10:10:00Z",
+  "command": "tool-pool",
+  "exit_code": 0,
+  "simple_mode": false,
+  "include_mcp": true,
+  "tool_count": 184,
+  "tools": [
+    {"name": "BashTool", "source_hint": "tools/BashTool/BashTool.tsx"}
+  ]
+}
+```
+
+### `bootstrap-graph`
+
+```json
+{
+  "timestamp": "2026-04-22T10:10:00Z",
+  "command": "bootstrap-graph",
+  "exit_code": 0,
+  "stages": ["stage 1", "stage 2", "..."],
+  "note": "bootstrap-graph is markdown-only in this version"
+}
+```
+
+---
+
+## Versioning & Compatibility
+
+- **schema_version = "1.0":** Current as of 2026-04-22. Covers all 13 clawable commands.
+- **Breaking changes** (e.g. renaming a field) bump schema_version to "2.0".
+- **Additive changes** (e.g. new optional field) stay at "1.0" and are backward compatible.
+- Downstream claws **must** check `schema_version` before relying on field presence.
+
+---
+
+## Regression Testing
+
+Each command is covered by:
+1. **Fixture file** (golden JSON snapshot under `tests/fixtures/json/<command>.json`)
+2. **Parametrised test** in `test_cli_parity_audit.py::TestJsonOutputContractEndToEnd`
+3. **Field consistency test** (new, tracked as ROADMAP #172)
+
+To update a fixture after a intentional schema change:
+```bash
+claw <command> --output-format json <args> > tests/fixtures/json/<command>.json
+# Review the diff, commit
+git add tests/fixtures/json/<command>.json
+```
+
+To verify no regressions:
+```bash
+cargo test --release test_json_envelope_field_consistency
+```
+
+---
+
+## Design Notes
+
+**Why common fields on every response?**
+- Downstream claws can build one error handler that works for all commands
+- Timestamp + command + exit_code give context without scraping argv or timestamps from command output
+- `schema_version` signals compatibility for future upgrades
+
+**Why both "found" and "error" on not-found?**
+- Exit code 1 covers both "entity missing" and "operation failed"
+- `found=false` distinguishes not-found from error without string matching
+- `error.kind` and `error.retryable` let automation decide: retry a temporary miss vs escalate a permanent refusal
+
+**Why "operation" and "target" in error?**
+- Claws can aggregate failures by operation type (e.g. "how many `write` ops failed?")
+- Claws can implement per-target retry policy (e.g. "skip missing files, retry networking")
+- Pure text errors ("No such file") do not provide enough structure for pattern matching
+
+**Why "handled" vs "found"?**
+- `show-command` reports `found: bool` (inventory signal: "does this exist?")
+- `exec-command` reports `handled: bool` (operational signal: "was this work performed?")
+- The names matter: a command can be found but not handled (e.g. too large for context window), or handled silently (no output message)

USAGE.md

@@ -2,6 +2,9 @@
 
 This guide covers the current Rust workspace under `rust/` and the `claw` CLI binary. If you are brand new, make the doctor health check your first run: start `claw`, then run `/doctor`.
 
+> [!TIP]
+> **Building orchestration code that calls `claw` as a subprocess?** See [`ERROR_HANDLING.md`](./ERROR_HANDLING.md) for the unified error-handling pattern (one handler for all 14 clawable commands, exit codes, JSON envelope contract, and recovery strategies).
+
 ## Quick-start health check
 
 Run this before prompts, sessions, or automation:
@@ -43,6 +46,35 @@ cd rust
 /doctor
 ```
 
+Or run doctor directly with JSON output for scripting:
+
+```bash
+cd rust
+./target/debug/claw doctor --output-format json
+```
+
+**Note:** Diagnostic verbs (`doctor`, `status`, `sandbox`, `version`) support `--output-format json` for machine-readable output. Invalid suffix arguments (e.g., `--json`) are now rejected at parse time rather than falling through to prompt dispatch.
+
+### Initialize a repository
+
+Set up a new repository with `.claw` config, `.claw.json`, `.gitignore` entries, and a `CLAUDE.md` guidance file:
+
+```bash
+cd /path/to/your/repo
+./target/debug/claw init
+```
+
+Text mode (human-readable) shows artifact creation summary with project path and next steps. Idempotent — running multiple times in the same repo marks already-created files as "skipped".
+
+JSON mode for scripting:
+```bash
+./target/debug/claw init --output-format json
+```
+
+Returns structured output with `project_path`, `created[]`, `updated[]`, `skipped[]` arrays (one per artifact), and `artifacts[]` carrying each file's `name` and machine-stable `status` tag. The legacy `message` field preserves backward compatibility.
+
+**Why structured fields matter:** Claws can detect per-artifact state (`created` vs `updated` vs `skipped`) without substring-matching human prose. Use the `created[]`, `updated[]`, and `skipped[]` arrays for conditional follow-up logic (e.g., only commit if files were actually created, not just updated).
+
 ### Interactive REPL
 
 ```bash
@@ -66,11 +98,96 @@ cd rust
 
 ### JSON output for scripting
 
+All clawable commands support `--output-format json` for machine-readable output. Every invocation returns a consistent JSON envelope with `exit_code`, `command`, `timestamp`, and either `{success fields}` or `{error: {kind, message, ...}}`.
+
 ```bash
 cd rust
 ./target/debug/claw --output-format json prompt "status"
+./target/debug/claw --output-format json load-session my-session-id
+./target/debug/claw --output-format json turn-loop "analyze logs" --max-turns 1
 ```
 
+**Building a dispatcher or orchestration script?** See [`ERROR_HANDLING.md`](./ERROR_HANDLING.md) for the unified error-handling pattern. One code example works for all 14 clawable commands: parse the exit code, classify by `error.kind`, apply recovery strategies (retry, timeout recovery, validation, logging). Use that pattern instead of reimplementing error handling per command.
+
+### Inspect worker state
+
+The `claw state` command reads `.claw/worker-state.json`, which is written by the interactive REPL or a one-shot prompt when a worker executes a task. This file contains the worker ID, session reference, model, and permission mode.
+
+Prerequisite: You must run `claw` (interactive REPL) or `claw prompt <text>` at least once in the repository to produce the worker state file.
+
+```bash
+cd rust
+./target/debug/claw state
+```
+
+JSON mode:
+```bash
+./target/debug/claw state --output-format json
+```
+
+If you run `claw state` before any worker has executed, you will see a helpful error:
+```
+error: no worker state file found at .claw/worker-state.json
+  Hint: worker state is written by the interactive REPL or a non-interactive prompt.
+  Run:   claw               # start the REPL (writes state on first turn)
+  Or:    claw prompt <text> # run one non-interactive turn
+  Then rerun: claw state [--output-format json]
+```
+
+## Advanced slash commands (Interactive REPL only)
+
+These commands are available inside the interactive REPL (`claw` with no args). They extend the assistant with workspace analysis, planning, and navigation features.
+
+### `/ultraplan` — Deep planning with multi-step reasoning
+
+**Purpose:** Break down a complex task into steps using extended reasoning.
+
+```bash
+# Start the REPL
+claw
+
+# Inside the REPL
+/ultraplan refactor the auth module to use async/await
+/ultraplan design a caching layer for database queries
+/ultraplan analyze this module for performance bottlenecks
+```
+
+Output: A structured plan with numbered steps, reasoning for each step, and expected outcomes. Use this when you want the assistant to think through a problem in detail before coding.
+
+### `/teleport` — Jump to a file or symbol
+
+**Purpose:** Quickly navigate to a file, function, class, or struct by name.
+
+```bash
+# Jump to a symbol
+/teleport UserService
+/teleport authenticate_user
+/teleport RequestHandler
+
+# Jump to a file
+/teleport src/auth.rs
+/teleport crates/runtime/lib.rs
+/teleport ./ARCHITECTURE.md
+```
+
+Output: The file content, with the requested symbol highlighted or the file fully loaded. Useful for exploring the codebase without manually navigating directories. If multiple matches exist, the assistant shows the top candidates.
+
+### `/bughunter` — Scan for likely bugs and issues
+
+**Purpose:** Analyze code for common pitfalls, anti-patterns, and potential bugs.
+
+```bash
+# Scan the entire workspace
+/bughunter
+
+# Scan a specific directory or file
+/bughunter src/handlers
+/bughunter rust/crates/runtime
+/bughunter src/auth.rs
+```
+
+Output: A list of suspicious patterns with explanations (e.g., "unchecked unwrap()", "potential race condition", "missing error handling"). Each finding includes the file, line number, and suggested fix. Use this as a first pass before a full code review.
+
 ## Model and permission controls
 
 ```bash

rust/.claw.json

@@ -0,0 +1,5 @@
+{
+  "permissions": {
+    "defaultMode": "dontAsk"
+  }
+}

rust/.gitignore

@@ -1,3 +1,7 @@
 target/
 .omx/
 .clawd-agents/
+# Claw Code local artifacts
+.claw/settings.local.json
+.claw/sessions/
+.clawhip/

rust/CLAUDE.md

@@ -0,0 +1,15 @@
+# CLAUDE.md
+
+This file provides guidance to Claw Code (clawcode.dev) when working with code in this repository.
+
+## Detected stack
+- Languages: Rust.
+- Frameworks: none detected from the supported starter markers.
+
+## Verification
+- Run Rust verification from the repo root: `cargo fmt`, `cargo clippy --workspace --all-targets -- -D warnings`, `cargo test --workspace`
+
+## Working agreement
+- Prefer small, reviewable changes and keep generated bootstrap files aligned with actual repo workflows.
+- Keep shared defaults in `.claw.json`; reserve `.claw/settings.local.json` for machine-local overrides.
+- Do not overwrite existing `CLAUDE.md` content automatically; update it intentionally when repo workflows change.

rust/crates/commands/src/lib.rs

@@ -2554,11 +2554,22 @@ fn render_mcp_report_for(
 
     match normalize_optional_args(args) {
         None | Some("list") => {
-            let runtime_config = loader.load()?;
-            Ok(render_mcp_summary_report(
-                cwd,
-                runtime_config.mcp().servers(),
-            ))
+            // #144: degrade gracefully on config parse failure (same contract
+            // as #143 for `status`). Text mode prepends a "Config load error"
+            // block before the MCP list; the list falls back to empty.
+            match loader.load() {
+                Ok(runtime_config) => Ok(render_mcp_summary_report(
+                    cwd,
+                    runtime_config.mcp().servers(),
+                )),
+                Err(err) => {
+                    let empty = std::collections::BTreeMap::new();
+                    Ok(format!(
+                        "Config load error\n  Status           fail\n  Summary          runtime config failed to load; reporting partial MCP view\n  Details          {err}\n  Hint             `claw doctor` classifies config parse errors; fix the listed field and rerun\n\n{}",
+                        render_mcp_summary_report(cwd, &empty)
+                    ))
+                }
+            }
         }
         Some(args) if is_help_arg(args) => Ok(render_mcp_usage(None)),
         Some("show") => Ok(render_mcp_usage(Some("show"))),
@@ -2571,12 +2582,19 @@ fn render_mcp_report_for(
             if parts.next().is_some() {
                 return Ok(render_mcp_usage(Some(args)));
             }
-            let runtime_config = loader.load()?;
-            Ok(render_mcp_server_report(
-                cwd,
-                server_name,
-                runtime_config.mcp().get(server_name),
-            ))
+            // #144: same degradation for `mcp show`; if config won't parse,
+            // the specific server lookup can't succeed, so report the parse
+            // error with context.
+            match loader.load() {
+                Ok(runtime_config) => Ok(render_mcp_server_report(
+                    cwd,
+                    server_name,
+                    runtime_config.mcp().get(server_name),
+                )),
+                Err(err) => Ok(format!(
+                    "Config load error\n  Status           fail\n  Summary          runtime config failed to load; cannot resolve `{server_name}`\n  Details          {err}\n  Hint             `claw doctor` classifies config parse errors; fix the listed field and rerun"
+                )),
+            }
         }
         Some(args) => Ok(render_mcp_usage(Some(args))),
     }
@@ -2599,11 +2617,35 @@ fn render_mcp_report_json_for(
 
     match normalize_optional_args(args) {
         None | Some("list") => {
-            let runtime_config = loader.load()?;
-            Ok(render_mcp_summary_report_json(
-                cwd,
-                runtime_config.mcp().servers(),
-            ))
+            // #144: match #143's degraded envelope contract. On config parse
+            // failure, emit top-level `status: "degraded"` with
+            // `config_load_error`, empty servers[], and exit 0. On clean
+            // runs, the existing serializer adds `status: "ok"` below.
+            match loader.load() {
+                Ok(runtime_config) => {
+                    let mut value = render_mcp_summary_report_json(
+                        cwd,
+                        runtime_config.mcp().servers(),
+                    );
+                    if let Some(map) = value.as_object_mut() {
+                        map.insert("status".to_string(), Value::String("ok".to_string()));
+                        map.insert("config_load_error".to_string(), Value::Null);
+                    }
+                    Ok(value)
+                }
+                Err(err) => {
+                    let empty = std::collections::BTreeMap::new();
+                    let mut value = render_mcp_summary_report_json(cwd, &empty);
+                    if let Some(map) = value.as_object_mut() {
+                        map.insert("status".to_string(), Value::String("degraded".to_string()));
+                        map.insert(
+                            "config_load_error".to_string(),
+                            Value::String(err.to_string()),
+                        );
+                    }
+                    Ok(value)
+                }
+            }
         }
         Some(args) if is_help_arg(args) => Ok(render_mcp_usage_json(None)),
         Some("show") => Ok(render_mcp_usage_json(Some("show"))),
@@ -2616,12 +2658,29 @@ fn render_mcp_report_json_for(
             if parts.next().is_some() {
                 return Ok(render_mcp_usage_json(Some(args)));
             }
-            let runtime_config = loader.load()?;
-            Ok(render_mcp_server_report_json(
-                cwd,
-                server_name,
-                runtime_config.mcp().get(server_name),
-            ))
+            // #144: same degradation pattern for show action.
+            match loader.load() {
+                Ok(runtime_config) => {
+                    let mut value = render_mcp_server_report_json(
+                        cwd,
+                        server_name,
+                        runtime_config.mcp().get(server_name),
+                    );
+                    if let Some(map) = value.as_object_mut() {
+                        map.insert("status".to_string(), Value::String("ok".to_string()));
+                        map.insert("config_load_error".to_string(), Value::Null);
+                    }
+                    Ok(value)
+                }
+                Err(err) => Ok(serde_json::json!({
+                    "kind": "mcp",
+                    "action": "show",
+                    "server": server_name,
+                    "status": "degraded",
+                    "config_load_error": err.to_string(),
+                    "working_directory": cwd.display().to_string(),
+                })),
+            }
         }
         Some(args) => Ok(render_mcp_usage_json(Some(args))),
     }
@@ -5479,6 +5538,82 @@ mod tests {
         let _ = fs::remove_dir_all(config_home);
     }
 
+    #[test]
+    fn mcp_degrades_gracefully_on_malformed_mcp_config_144() {
+        // #144: mirror of #143's partial-success contract for `claw mcp`.
+        // Previously `mcp` hard-failed on any config parse error, hiding
+        // well-formed servers and forcing claws to fall back to `doctor`.
+        // Now `mcp` emits a degraded envelope instead: exit 0, status:
+        // "degraded", config_load_error populated, servers[] empty.
+        let _guard = env_guard();
+        let workspace = temp_dir("mcp-degrades-144");
+        let config_home = temp_dir("mcp-degrades-144-cfg");
+        fs::create_dir_all(workspace.join(".claw")).expect("create workspace .claw dir");
+        fs::create_dir_all(&config_home).expect("create config home");
+        // One valid server + one malformed entry missing `command`.
+        fs::write(
+            workspace.join(".claw.json"),
+            r#"{
+  "mcpServers": {
+    "everything": {"command": "npx", "args": ["-y", "@modelcontextprotocol/server-everything"]},
+    "missing-command": {"args": ["arg-only-no-command"]}
+  }
+}
+"#,
+        )
+        .expect("write malformed .claw.json");
+
+        let loader = ConfigLoader::new(&workspace, &config_home);
+        // list action: must return Ok (not Err) with degraded envelope.
+        let list = render_mcp_report_json_for(&loader, &workspace, None)
+            .expect("mcp list should not hard-fail on config parse errors (#144)");
+        assert_eq!(list["kind"], "mcp");
+        assert_eq!(list["action"], "list");
+        assert_eq!(
+            list["status"].as_str(),
+            Some("degraded"),
+            "top-level status should be 'degraded': {list}"
+        );
+        let err = list["config_load_error"]
+            .as_str()
+            .expect("config_load_error must be a string on degraded runs");
+        assert!(
+            err.contains("mcpServers.missing-command"),
+            "config_load_error should name the malformed field path: {err}"
+        );
+        assert_eq!(list["configured_servers"], 0);
+        assert!(list["servers"].as_array().unwrap().is_empty());
+
+        // show action: should also degrade (not hard-fail).
+        let show = render_mcp_report_json_for(&loader, &workspace, Some("show everything"))
+            .expect("mcp show should not hard-fail on config parse errors (#144)");
+        assert_eq!(show["kind"], "mcp");
+        assert_eq!(show["action"], "show");
+        assert_eq!(
+            show["status"].as_str(),
+            Some("degraded"),
+            "show action should also report status: 'degraded': {show}"
+        );
+        assert!(show["config_load_error"].is_string());
+
+        // Clean path: status: "ok", config_load_error: null.
+        let clean_ws = temp_dir("mcp-degrades-144-clean");
+        fs::create_dir_all(&clean_ws).expect("clean ws");
+        let clean_loader = ConfigLoader::new(&clean_ws, &config_home);
+        let clean_list = render_mcp_report_json_for(&clean_loader, &clean_ws, None)
+            .expect("clean mcp list should succeed");
+        assert_eq!(
+            clean_list["status"].as_str(),
+            Some("ok"),
+            "clean run should report status: 'ok'"
+        );
+        assert!(clean_list["config_load_error"].is_null());
+
+        let _ = fs::remove_dir_all(workspace);
+        let _ = fs::remove_dir_all(config_home);
+        let _ = fs::remove_dir_all(clean_ws);
+    }
+
     #[test]
     fn parses_quoted_skill_frontmatter_values() {
         let contents = "---\nname: \"hud\"\ndescription: 'Quoted description'\n---\n";

rust/crates/runtime/src/bash.rs

@@ -8,6 +8,7 @@ use tokio::process::Command as TokioCommand;
 use tokio::runtime::Builder;
 use tokio::time::timeout;
 
+use crate::lane_events::{LaneEvent, ShipMergeMethod, ShipProvenance};
 use crate::sandbox::{
     build_linux_sandbox_command, resolve_sandbox_status_for_request, FilesystemIsolationMode,
     SandboxConfig, SandboxStatus,
@@ -102,11 +103,76 @@ pub fn execute_bash(input: BashCommandInput) -> io::Result<BashCommandOutput> {
     runtime.block_on(execute_bash_async(input, sandbox_status, cwd))
 }
 
+/// Detect git push to main and emit ship provenance event
+fn detect_and_emit_ship_prepared(command: &str) {
+    let trimmed = command.trim();
+    // Simple detection: git push with main/master
+    if trimmed.contains("git push") && (trimmed.contains("main") || trimmed.contains("master")) {
+        // Emit ship.prepared event
+        let now = std::time::SystemTime::now()
+            .duration_since(std::time::UNIX_EPOCH)
+            .unwrap_or_default()
+            .as_millis();
+        let provenance = ShipProvenance {
+            source_branch: get_current_branch().unwrap_or_else(|| "unknown".to_string()),
+            base_commit: get_head_commit().unwrap_or_default(),
+            commit_count: 0, // Would need to calculate from range
+            commit_range: "unknown..HEAD".to_string(),
+            merge_method: ShipMergeMethod::DirectPush,
+            actor: get_git_actor().unwrap_or_else(|| "unknown".to_string()),
+            pr_number: None,
+        };
+        let _event = LaneEvent::ship_prepared(format!("{}", now), &provenance);
+        // Log to stderr as interim routing before event stream integration
+        eprintln!(
+            "[ship.prepared] branch={} -> main, commits={}, actor={}",
+            provenance.source_branch, provenance.commit_count, provenance.actor
+        );
+    }
+}
+
+fn get_current_branch() -> Option<String> {
+    let output = Command::new("git")
+        .args(["branch", "--show-current"])
+        .output()
+        .ok()?;
+    if output.status.success() {
+        Some(String::from_utf8_lossy(&output.stdout).trim().to_string())
+    } else {
+        None
+    }
+}
+
+fn get_head_commit() -> Option<String> {
+    let output = Command::new("git")
+        .args(["rev-parse", "--short", "HEAD"])
+        .output()
+        .ok()?;
+    if output.status.success() {
+        Some(String::from_utf8_lossy(&output.stdout).trim().to_string())
+    } else {
+        None
+    }
+}
+
+fn get_git_actor() -> Option<String> {
+    let name = Command::new("git")
+        .args(["config", "user.name"])
+        .output()
+        .ok()
+        .filter(|o| o.status.success())
+        .map(|o| String::from_utf8_lossy(&o.stdout).trim().to_string())?;
+    Some(name)
+}
+
 async fn execute_bash_async(
     input: BashCommandInput,
     sandbox_status: SandboxStatus,
     cwd: std::path::PathBuf,
 ) -> io::Result<BashCommandOutput> {
+    // Detect and emit ship provenance for git push operations
+    detect_and_emit_ship_prepared(&input.command);
+    
     let mut command = prepare_tokio_command(&input.command, &cwd, &sandbox_status, true);
 
     let output_result = if let Some(timeout_ms) = input.timeout {

rust/crates/runtime/src/config.rs

@@ -1254,11 +1254,21 @@ mod tests {
     use std::time::{SystemTime, UNIX_EPOCH};
 
     fn temp_dir() -> std::path::PathBuf {
+        // #149: previously used `runtime-config-{nanos}` which collided
+        // under parallel `cargo test --workspace` when multiple tests
+        // started within the same nanosecond bucket on fast machines.
+        // Add process id + a monotonically-incrementing atomic counter
+        // so every callsite gets a provably-unique directory regardless
+        // of clock resolution or scheduling.
+        use std::sync::atomic::{AtomicU64, Ordering};
+        static COUNTER: AtomicU64 = AtomicU64::new(0);
         let nanos = SystemTime::now()
             .duration_since(UNIX_EPOCH)
             .expect("time should be after epoch")
             .as_nanos();
-        std::env::temp_dir().join(format!("runtime-config-{nanos}"))
+        let pid = std::process::id();
+        let seq = COUNTER.fetch_add(1, Ordering::Relaxed);
+        std::env::temp_dir().join(format!("runtime-config-{pid}-{nanos}-{seq}"))
     }
 
     #[test]

rust/crates/runtime/src/lane_events.rs

@@ -38,6 +38,15 @@ pub enum LaneEventName {
     BranchStaleAgainstMain,
     #[serde(rename = "branch.workspace_mismatch")]
     BranchWorkspaceMismatch,
+    /// Ship/provenance events — §4.44.5
+    #[serde(rename = "ship.prepared")]
+    ShipPrepared,
+    #[serde(rename = "ship.commits_selected")]
+    ShipCommitsSelected,
+    #[serde(rename = "ship.merged")]
+    ShipMerged,
+    #[serde(rename = "ship.pushed_main")]
+    ShipPushedMain,
 }
 
 #[derive(Debug, Clone, Copy, PartialEq, Eq, Serialize, Deserialize)]
@@ -383,11 +392,31 @@ pub fn dedupe_terminal_events(events: &[LaneEvent]) -> Vec<LaneEvent> {
     result
 }
 
+#[derive(Debug, Clone, PartialEq, Eq, Serialize, Deserialize)]
+pub enum BlockedSubphase {
+    #[serde(rename = "blocked.trust_prompt")]
+    TrustPrompt { gate_repo: String },
+    #[serde(rename = "blocked.prompt_delivery")]
+    PromptDelivery { attempt: u32 },
+    #[serde(rename = "blocked.plugin_init")]
+    PluginInit { plugin_name: String },
+    #[serde(rename = "blocked.mcp_handshake")]
+    McpHandshake { server_name: String, attempt: u32 },
+    #[serde(rename = "blocked.branch_freshness")]
+    BranchFreshness { behind_main: u32 },
+    #[serde(rename = "blocked.test_hang")]
+    TestHang { elapsed_secs: u32, test_name: Option<String> },
+    #[serde(rename = "blocked.report_pending")]
+    ReportPending { since_secs: u32 },
+}
+
 #[derive(Debug, Clone, PartialEq, Eq, Serialize, Deserialize)]
 pub struct LaneEventBlocker {
     #[serde(rename = "failureClass")]
     pub failure_class: LaneFailureClass,
     pub detail: String,
+    #[serde(skip_serializing_if = "Option::is_none")]
+    pub subphase: Option<BlockedSubphase>,
 }
 
 #[derive(Debug, Clone, PartialEq, Eq, Serialize, Deserialize)]
@@ -404,6 +433,29 @@ pub struct LaneCommitProvenance {
     pub lineage: Vec<String>,
 }
 
+/// Ship/provenance metadata — §4.44.5
+#[derive(Debug, Clone, PartialEq, Eq, Serialize, Deserialize)]
+pub struct ShipProvenance {
+    pub source_branch: String,
+    pub base_commit: String,
+    pub commit_count: u32,
+    pub commit_range: String,
+    pub merge_method: ShipMergeMethod,
+    pub actor: String,
+    #[serde(skip_serializing_if = "Option::is_none")]
+    pub pr_number: Option<u32>,
+}
+
+#[derive(Debug, Clone, Copy, PartialEq, Eq, Serialize, Deserialize)]
+#[serde(rename_all = "snake_case")]
+pub enum ShipMergeMethod {
+    DirectPush,
+    FastForward,
+    MergeCommit,
+    SquashMerge,
+    RebaseMerge,
+}
+
 #[derive(Debug, Clone, PartialEq, Eq, Serialize, Deserialize)]
 pub struct LaneEvent {
     pub event: LaneEventName,
@@ -487,16 +539,56 @@ impl LaneEvent {
 
     #[must_use]
     pub fn blocked(emitted_at: impl Into<String>, blocker: &LaneEventBlocker) -> Self {
-        Self::new(LaneEventName::Blocked, LaneEventStatus::Blocked, emitted_at)
+        let mut event = Self::new(LaneEventName::Blocked, LaneEventStatus::Blocked, emitted_at)
             .with_failure_class(blocker.failure_class)
-            .with_detail(blocker.detail.clone())
+            .with_detail(blocker.detail.clone());
+        if let Some(ref subphase) = blocker.subphase {
+            event = event.with_data(serde_json::to_value(subphase).expect("subphase should serialize"));
+        }
+        event
     }
 
     #[must_use]
     pub fn failed(emitted_at: impl Into<String>, blocker: &LaneEventBlocker) -> Self {
-        Self::new(LaneEventName::Failed, LaneEventStatus::Failed, emitted_at)
+        let mut event = Self::new(LaneEventName::Failed, LaneEventStatus::Failed, emitted_at)
             .with_failure_class(blocker.failure_class)
-            .with_detail(blocker.detail.clone())
+            .with_detail(blocker.detail.clone());
+        if let Some(ref subphase) = blocker.subphase {
+            event = event.with_data(serde_json::to_value(subphase).expect("subphase should serialize"));
+        }
+        event
+    }
+
+    /// Ship prepared — §4.44.5
+    #[must_use]
+    pub fn ship_prepared(emitted_at: impl Into<String>, provenance: &ShipProvenance) -> Self {
+        Self::new(LaneEventName::ShipPrepared, LaneEventStatus::Ready, emitted_at)
+            .with_data(serde_json::to_value(provenance).expect("ship provenance should serialize"))
+    }
+
+    /// Ship commits selected — §4.44.5
+    #[must_use]
+    pub fn ship_commits_selected(
+        emitted_at: impl Into<String>,
+        commit_count: u32,
+        commit_range: impl Into<String>,
+    ) -> Self {
+        Self::new(LaneEventName::ShipCommitsSelected, LaneEventStatus::Ready, emitted_at)
+            .with_detail(format!("{} commits: {}", commit_count, commit_range.into()))
+    }
+
+    /// Ship merged — §4.44.5
+    #[must_use]
+    pub fn ship_merged(emitted_at: impl Into<String>, provenance: &ShipProvenance) -> Self {
+        Self::new(LaneEventName::ShipMerged, LaneEventStatus::Completed, emitted_at)
+            .with_data(serde_json::to_value(provenance).expect("ship provenance should serialize"))
+    }
+
+    /// Ship pushed to main — §4.44.5
+    #[must_use]
+    pub fn ship_pushed_main(emitted_at: impl Into<String>, provenance: &ShipProvenance) -> Self {
+        Self::new(LaneEventName::ShipPushedMain, LaneEventStatus::Completed, emitted_at)
+            .with_data(serde_json::to_value(provenance).expect("ship provenance should serialize"))
     }
 
     #[must_use]
@@ -570,9 +662,10 @@ mod tests {
 
     use super::{
         compute_event_fingerprint, dedupe_superseded_commit_events, dedupe_terminal_events,
-        is_terminal_event, EventProvenance, LaneCommitProvenance, LaneEvent, LaneEventBlocker,
-        LaneEventBuilder, LaneEventMetadata, LaneEventName, LaneEventStatus, LaneFailureClass,
-        LaneOwnership, SessionIdentity, WatcherAction,
+        is_terminal_event, BlockedSubphase, EventProvenance, LaneCommitProvenance, LaneEvent,
+        LaneEventBlocker, LaneEventBuilder, LaneEventMetadata, LaneEventName, LaneEventStatus,
+        LaneFailureClass, LaneOwnership, SessionIdentity, ShipMergeMethod, ShipProvenance,
+        WatcherAction,
     };
 
     #[test]
@@ -601,6 +694,10 @@ mod tests {
                 LaneEventName::BranchWorkspaceMismatch,
                 "branch.workspace_mismatch",
             ),
+            (LaneEventName::ShipPrepared, "ship.prepared"),
+            (LaneEventName::ShipCommitsSelected, "ship.commits_selected"),
+            (LaneEventName::ShipMerged, "ship.merged"),
+            (LaneEventName::ShipPushedMain, "ship.pushed_main"),
         ];
 
         for (event, expected) in cases {
@@ -641,6 +738,10 @@ mod tests {
         let blocker = LaneEventBlocker {
             failure_class: LaneFailureClass::McpStartup,
             detail: "broken server".to_string(),
+            subphase: Some(BlockedSubphase::McpHandshake {
+                server_name: "test-server".to_string(),
+                attempt: 1,
+            }),
         };
 
         let blocked = LaneEvent::blocked("2026-04-04T00:00:00Z", &blocker);
@@ -686,6 +787,34 @@ mod tests {
         );
     }
 
+    #[test]
+    fn ship_provenance_events_serialize_to_expected_wire_values() {
+        let provenance = ShipProvenance {
+            source_branch: "feature/provenance".to_string(),
+            base_commit: "dd73962".to_string(),
+            commit_count: 6,
+            commit_range: "dd73962..c956f78".to_string(),
+            merge_method: ShipMergeMethod::DirectPush,
+            actor: "Jobdori".to_string(),
+            pr_number: None,
+        };
+
+        let prepared = LaneEvent::ship_prepared("2026-04-20T14:30:00Z", &provenance);
+        let prepared_json = serde_json::to_value(&prepared).expect("ship event should serialize");
+        assert_eq!(prepared_json["event"], "ship.prepared");
+        assert_eq!(prepared_json["data"]["commit_count"], 6);
+        assert_eq!(prepared_json["data"]["source_branch"], "feature/provenance");
+
+        let pushed = LaneEvent::ship_pushed_main("2026-04-20T14:35:00Z", &provenance);
+        let pushed_json = serde_json::to_value(&pushed).expect("ship event should serialize");
+        assert_eq!(pushed_json["event"], "ship.pushed_main");
+        assert_eq!(pushed_json["data"]["merge_method"], "direct_push");
+
+        let round_trip: LaneEvent =
+            serde_json::from_value(pushed_json).expect("ship event should deserialize");
+        assert_eq!(round_trip.event, LaneEventName::ShipPushedMain);
+    }
+
     #[test]
     fn commit_events_can_carry_worktree_and_supersession_metadata() {
         let event = LaneEvent::commit_created(

rust/crates/runtime/src/lib.rs

@@ -84,9 +84,10 @@ pub use hooks::{
 };
 pub use lane_events::{
     compute_event_fingerprint, dedupe_superseded_commit_events, dedupe_terminal_events,
-    is_terminal_event, EventProvenance, LaneCommitProvenance, LaneEvent, LaneEventBlocker,
-    LaneEventBuilder, LaneEventMetadata, LaneEventName, LaneEventStatus, LaneFailureClass,
-    LaneOwnership, SessionIdentity, WatcherAction,
+    is_terminal_event, BlockedSubphase, EventProvenance, LaneCommitProvenance, LaneEvent,
+    LaneEventBlocker, LaneEventBuilder, LaneEventMetadata, LaneEventName, LaneEventStatus,
+    LaneFailureClass, LaneOwnership, SessionIdentity, ShipMergeMethod, ShipProvenance,
+    WatcherAction,
 };
 pub use mcp::{
     mcp_server_signature, mcp_tool_name, mcp_tool_prefix, normalize_name_for_mcp,

rust/crates/runtime/src/session_control.rs

@@ -31,14 +31,19 @@ impl SessionStore {
     /// The on-disk layout becomes `<cwd>/.claw/sessions/<workspace_hash>/`.
     pub fn from_cwd(cwd: impl AsRef<Path>) -> Result<Self, SessionControlError> {
         let cwd = cwd.as_ref();
-        let sessions_root = cwd
+        // #151: canonicalize so equivalent paths (symlinks, relative vs
+        // absolute, /tmp vs /private/tmp on macOS) produce the same
+        // workspace_fingerprint. Falls back to the raw path if canonicalize
+        // fails (e.g. the directory doesn't exist yet).
+        let canonical_cwd = fs::canonicalize(cwd).unwrap_or_else(|_| cwd.to_path_buf());
+        let sessions_root = canonical_cwd
             .join(".claw")
             .join("sessions")
-            .join(workspace_fingerprint(cwd));
+            .join(workspace_fingerprint(&canonical_cwd));
         fs::create_dir_all(&sessions_root)?;
         Ok(Self {
             sessions_root,
-            workspace_root: cwd.to_path_buf(),
+            workspace_root: canonical_cwd,
         })
     }
 
@@ -51,14 +56,18 @@ impl SessionStore {
         workspace_root: impl AsRef<Path>,
     ) -> Result<Self, SessionControlError> {
         let workspace_root = workspace_root.as_ref();
+        // #151: canonicalize workspace_root for consistent fingerprinting
+        // across equivalent path representations.
+        let canonical_workspace = fs::canonicalize(workspace_root)
+            .unwrap_or_else(|_| workspace_root.to_path_buf());
         let sessions_root = data_dir
             .as_ref()
             .join("sessions")
-            .join(workspace_fingerprint(workspace_root));
+            .join(workspace_fingerprint(&canonical_workspace));
         fs::create_dir_all(&sessions_root)?;
         Ok(Self {
             sessions_root,
-            workspace_root: workspace_root.to_path_buf(),
+            workspace_root: canonical_workspace,
         })
     }
 
@@ -103,7 +112,7 @@ impl SessionStore {
             candidate
         } else if looks_like_path {
             return Err(SessionControlError::Format(
-                format_missing_session_reference(reference),
+                format_missing_session_reference(reference, &self.sessions_root),
             ));
         } else {
             self.resolve_managed_path(reference)?
@@ -134,7 +143,7 @@ impl SessionStore {
             }
         }
         Err(SessionControlError::Format(
-            format_missing_session_reference(session_id),
+            format_missing_session_reference(session_id, &self.sessions_root),
         ))
     }
 
@@ -152,7 +161,7 @@ impl SessionStore {
         self.list_sessions()?
             .into_iter()
             .next()
-            .ok_or_else(|| SessionControlError::Format(format_no_managed_sessions()))
+            .ok_or_else(|| SessionControlError::Format(format_no_managed_sessions(&self.sessions_root)))
     }
 
     pub fn load_session(
@@ -513,15 +522,25 @@ fn session_id_from_path(path: &Path) -> Option<String> {
         .map(ToOwned::to_owned)
 }
 
-fn format_missing_session_reference(reference: &str) -> String {
+fn format_missing_session_reference(reference: &str, sessions_root: &Path) -> String {
+    // #80: show the actual workspace-fingerprint directory instead of lying about .claw/sessions/
+    let fingerprint_dir = sessions_root
+        .file_name()
+        .and_then(|f| f.to_str())
+        .unwrap_or("<unknown>");
     format!(
-        "session not found: {reference}\nHint: managed sessions live in .claw/sessions/. Try `{LATEST_SESSION_REFERENCE}` for the most recent session or `/session list` in the REPL."
+        "session not found: {reference}\nHint: managed sessions live in .claw/sessions/{fingerprint_dir}/ (workspace-specific partition).\nTry `{LATEST_SESSION_REFERENCE}` for the most recent session or `/session list` in the REPL."
     )
 }
 
-fn format_no_managed_sessions() -> String {
+fn format_no_managed_sessions(sessions_root: &Path) -> String {
+    // #80: show the actual workspace-fingerprint directory instead of lying about .claw/sessions/
+    let fingerprint_dir = sessions_root
+        .file_name()
+        .and_then(|f| f.to_str())
+        .unwrap_or("<unknown>");
     format!(
-        "no managed sessions found in .claw/sessions/\nStart `claw` to create a session, then rerun with `--resume {LATEST_SESSION_REFERENCE}`."
+        "no managed sessions found in .claw/sessions/{fingerprint_dir}/\nStart `claw` to create a session, then rerun with `--resume {LATEST_SESSION_REFERENCE}`.\nNote: claw partitions sessions per workspace fingerprint; sessions from other CWDs are invisible."
     )
 }
 
@@ -744,6 +763,40 @@ mod tests {
         assert_eq!(fp_a1.len(), 16, "fingerprint must be a 16-char hex string");
     }
 
+    /// #151 regression: equivalent paths (e.g. `/tmp/foo` vs `/private/tmp/foo`
+    /// on macOS where `/tmp` is a symlink to `/private/tmp`) must resolve to
+    /// the same session store. Previously they diverged because
+    /// `workspace_fingerprint()` hashed the raw path string. Now
+    /// `SessionStore::from_cwd()` canonicalizes first.
+    #[test]
+    fn session_store_from_cwd_canonicalizes_equivalent_paths() {
+        let base = temp_dir();
+        let real_dir = base.join("real-workspace");
+        fs::create_dir_all(&real_dir).expect("real workspace should exist");
+
+        // Build two stores via different but equivalent path representations:
+        // the raw path and the canonicalized path.
+        let raw_path = real_dir.clone();
+        let canonical_path = fs::canonicalize(&real_dir).expect("canonicalize ok");
+
+        let store_from_raw =
+            SessionStore::from_cwd(&raw_path).expect("store from raw should build");
+        let store_from_canonical =
+            SessionStore::from_cwd(&canonical_path).expect("store from canonical should build");
+
+        assert_eq!(
+            store_from_raw.sessions_dir(),
+            store_from_canonical.sessions_dir(),
+            "equivalent paths must produce the same sessions dir (raw={} canonical={})",
+            raw_path.display(),
+            canonical_path.display()
+        );
+
+        if base.exists() {
+            fs::remove_dir_all(base).expect("cleanup ok");
+        }
+    }
+
     #[test]
     fn session_store_from_cwd_isolates_sessions_by_workspace() {
         // given
@@ -832,6 +885,11 @@ mod tests {
         let workspace_b = base.join("repo-beta");
         fs::create_dir_all(&workspace_a).expect("workspace a should exist");
         fs::create_dir_all(&workspace_b).expect("workspace b should exist");
+        // #151: canonicalize so test expectations match the store's canonical
+        // workspace_root. Without this, the test builds sessions with a raw
+        // path but the store resolves to the canonical form.
+        let workspace_a = fs::canonicalize(&workspace_a).unwrap_or(workspace_a);
+        let workspace_b = fs::canonicalize(&workspace_b).unwrap_or(workspace_b);
 
         let store_b = SessionStore::from_cwd(&workspace_b).expect("store b should build");
         let legacy_root = workspace_b.join(".claw").join("sessions");
@@ -865,6 +923,8 @@ mod tests {
         // given
         let base = temp_dir();
         fs::create_dir_all(&base).expect("base dir should exist");
+        // #151: canonicalize for path-representation consistency with store.
+        let base = fs::canonicalize(&base).unwrap_or(base);
         let store = SessionStore::from_cwd(&base).expect("store should build");
         let legacy_root = base.join(".claw").join("sessions");
         let legacy_path = legacy_root.join("legacy-safe.jsonl");
@@ -893,6 +953,8 @@ mod tests {
         // given
         let base = temp_dir();
         fs::create_dir_all(&base).expect("base dir should exist");
+        // #151: canonicalize for path-representation consistency with store.
+        let base = fs::canonicalize(&base).unwrap_or(base);
         let store = SessionStore::from_cwd(&base).expect("store should build");
         let legacy_root = base.join(".claw").join("sessions");
         let legacy_path = legacy_root.join("legacy-unbound.json");

rust/crates/rusty-claude-cli/src/init.rs

@@ -27,6 +27,18 @@ impl InitStatus {
             Self::Skipped => "skipped (already exists)",
         }
     }
+
+    /// Machine-stable identifier for structured output (#142).
+    /// Unlike `label()`, this never changes wording: claws can switch on
+    /// these values without brittle substring matching.
+    #[must_use]
+    pub(crate) fn json_tag(self) -> &'static str {
+        match self {
+            Self::Created => "created",
+            Self::Updated => "updated",
+            Self::Skipped => "skipped",
+        }
+    }
 }
 
 #[derive(Debug, Clone, PartialEq, Eq)]
@@ -58,6 +70,36 @@ impl InitReport {
         lines.push("  Next step        Review and tailor the generated guidance".to_string());
         lines.join("\n")
     }
+
+    /// Summary constant that claws can embed in JSON output without having
+    /// to read it out of the human-formatted `message` string (#142).
+    pub(crate) const NEXT_STEP: &'static str = "Review and tailor the generated guidance";
+
+    /// Artifact names that ended in the given status. Used to build the
+    /// structured `created[]`/`updated[]`/`skipped[]` arrays for #142.
+    #[must_use]
+    pub(crate) fn artifacts_with_status(&self, status: InitStatus) -> Vec<String> {
+        self.artifacts
+            .iter()
+            .filter(|artifact| artifact.status == status)
+            .map(|artifact| artifact.name.to_string())
+            .collect()
+    }
+
+    /// Structured artifact list for JSON output (#142). Each entry carries
+    /// `name` and machine-stable `status` tag.
+    #[must_use]
+    pub(crate) fn artifact_json_entries(&self) -> Vec<serde_json::Value> {
+        self.artifacts
+            .iter()
+            .map(|artifact| {
+                serde_json::json!({
+                    "name": artifact.name,
+                    "status": artifact.status.json_tag(),
+                })
+            })
+            .collect()
+    }
 }
 
 #[derive(Debug, Clone, Default, PartialEq, Eq)]
@@ -333,7 +375,7 @@ fn framework_notes(detection: &RepoDetection) -> Vec<String> {
 
 #[cfg(test)]
 mod tests {
-    use super::{initialize_repo, render_init_claude_md};
+    use super::{initialize_repo, render_init_claude_md, InitStatus};
     use std::fs;
     use std::path::Path;
     use std::time::{SystemTime, UNIX_EPOCH};
@@ -413,6 +455,63 @@ mod tests {
         fs::remove_dir_all(root).expect("cleanup temp dir");
     }
 
+    #[test]
+    fn artifacts_with_status_partitions_fresh_and_idempotent_runs() {
+        // #142: the structured JSON output needs to be able to partition
+        // artifacts into created/updated/skipped without substring matching
+        // the human-formatted `message` string.
+        let root = temp_dir();
+        fs::create_dir_all(&root).expect("create root");
+
+        let fresh = initialize_repo(&root).expect("fresh init should succeed");
+        let created_names = fresh.artifacts_with_status(InitStatus::Created);
+        assert_eq!(
+            created_names,
+            vec![
+                ".claw/".to_string(),
+                ".claw.json".to_string(),
+                ".gitignore".to_string(),
+                "CLAUDE.md".to_string(),
+            ],
+            "fresh init should place all four artifacts in created[]"
+        );
+        assert!(
+            fresh.artifacts_with_status(InitStatus::Skipped).is_empty(),
+            "fresh init should have no skipped artifacts"
+        );
+
+        let second = initialize_repo(&root).expect("second init should succeed");
+        let skipped_names = second.artifacts_with_status(InitStatus::Skipped);
+        assert_eq!(
+            skipped_names,
+            vec![
+                ".claw/".to_string(),
+                ".claw.json".to_string(),
+                ".gitignore".to_string(),
+                "CLAUDE.md".to_string(),
+            ],
+            "idempotent init should place all four artifacts in skipped[]"
+        );
+        assert!(
+            second.artifacts_with_status(InitStatus::Created).is_empty(),
+            "idempotent init should have no created artifacts"
+        );
+
+        // artifact_json_entries() uses the machine-stable `json_tag()` which
+        // never changes wording (unlike `label()` which says "skipped (already exists)").
+        let entries = second.artifact_json_entries();
+        assert_eq!(entries.len(), 4);
+        for entry in &entries {
+            let status = entry.get("status").and_then(|v| v.as_str()).unwrap();
+            assert_eq!(
+                status, "skipped",
+                "machine status tag should be the bare word 'skipped', not label()'s 'skipped (already exists)'"
+            );
+        }
+
+        fs::remove_dir_all(root).expect("cleanup temp dir");
+    }
+
     #[test]
     fn render_init_template_mentions_detected_python_and_nextjs_markers() {
         let root = temp_dir();

rust/crates/rusty-claude-cli/tests/compact_output.rs

@@ -5,6 +5,7 @@ use std::sync::atomic::{AtomicU64, Ordering};
 use std::time::{SystemTime, UNIX_EPOCH};
 
 use mock_anthropic_service::{MockAnthropicService, SCENARIO_PREFIX};
+use serde_json::Value;
 
 static TEMP_COUNTER: AtomicU64 = AtomicU64::new(0);
 
@@ -125,6 +126,60 @@ fn compact_flag_streaming_text_only_emits_final_message_text() {
     fs::remove_dir_all(&workspace).expect("workspace cleanup should succeed");
 }
 
+#[test]
+fn compact_flag_with_json_output_emits_structured_json() {
+    let runtime = tokio::runtime::Runtime::new().expect("tokio runtime should build");
+    let server = runtime
+        .block_on(MockAnthropicService::spawn())
+        .expect("mock service should start");
+    let base_url = server.base_url();
+
+    let workspace = unique_temp_dir("compact-json");
+    let config_home = workspace.join("config-home");
+    let home = workspace.join("home");
+    fs::create_dir_all(&workspace).expect("workspace should exist");
+    fs::create_dir_all(&config_home).expect("config home should exist");
+    fs::create_dir_all(&home).expect("home should exist");
+
+    let prompt = format!("{SCENARIO_PREFIX}streaming_text");
+    let output = run_claw(
+        &workspace,
+        &config_home,
+        &home,
+        &base_url,
+        &[
+            "--model",
+            "sonnet",
+            "--permission-mode",
+            "read-only",
+            "--output-format",
+            "json",
+            "--compact",
+            &prompt,
+        ],
+    );
+
+    assert!(
+        output.status.success(),
+        "compact json run should succeed
+stdout:
+{}
+
+stderr:
+{}",
+        String::from_utf8_lossy(&output.stdout),
+        String::from_utf8_lossy(&output.stderr),
+    );
+    let stdout = String::from_utf8(output.stdout).expect("stdout should be utf8");
+    let parsed: Value = serde_json::from_str(&stdout).expect("compact json stdout should parse");
+    assert_eq!(parsed["message"], "Mock streaming says hello from the parity harness.");
+    assert_eq!(parsed["compact"], true);
+    assert_eq!(parsed["model"], "claude-sonnet-4-6");
+    assert!(parsed["usage"].is_object());
+
+    fs::remove_dir_all(&workspace).expect("workspace cleanup should succeed");
+}
+
 fn run_claw(
     cwd: &std::path::Path,
     config_home: &std::path::Path,

rust/crates/rusty-claude-cli/tests/output_format_contract.rs

@@ -388,6 +388,114 @@ fn assert_json_command(current_dir: &Path, args: &[&str]) -> Value {
     assert_json_command_with_env(current_dir, args, &[])
 }
 
+/// #247 regression helper: run claw expecting a non-zero exit and return
+/// the JSON error envelope parsed from stderr. Asserts exit != 0 and that
+/// the envelope includes `type: "error"` at the very least.
+fn assert_json_error_envelope(current_dir: &Path, args: &[&str]) -> Value {
+    let output = run_claw(current_dir, args, &[]);
+    assert!(
+        !output.status.success(),
+        "command unexpectedly succeeded; stdout:\n{}\nstderr:\n{}",
+        String::from_utf8_lossy(&output.stdout),
+        String::from_utf8_lossy(&output.stderr)
+    );
+    // The JSON envelope is written to stderr for error cases (see main.rs).
+    let envelope: Value = serde_json::from_slice(&output.stderr).unwrap_or_else(|err| {
+        panic!(
+            "stderr should be a JSON error envelope but failed to parse: {err}\nstderr bytes:\n{}",
+            String::from_utf8_lossy(&output.stderr)
+        )
+    });
+    assert_eq!(
+        envelope["type"], "error",
+        "envelope should carry type=error"
+    );
+    envelope
+}
+
+#[test]
+fn prompt_subcommand_without_arg_emits_cli_parse_envelope_with_hint_247() {
+    // #247: `claw prompt` with no argument must classify as `cli_parse`
+    // (not `unknown`) and the JSON envelope must carry the same actionable
+    // `Run claw --help for usage.` hint that text-mode stderr appends.
+    let root = unique_temp_dir("247-prompt-no-arg");
+    fs::create_dir_all(&root).expect("temp dir should exist");
+
+    let envelope = assert_json_error_envelope(&root, &["--output-format", "json", "prompt"]);
+    assert_eq!(
+        envelope["kind"], "cli_parse",
+        "prompt subcommand without arg should classify as cli_parse, envelope: {envelope}"
+    );
+    assert_eq!(
+        envelope["error"], "prompt subcommand requires a prompt string",
+        "short reason should match the raw error, envelope: {envelope}"
+    );
+    assert_eq!(
+        envelope["hint"],
+        "Run `claw --help` for usage.",
+        "JSON envelope must carry the same help-runbook hint as text mode, envelope: {envelope}"
+    );
+}
+
+#[test]
+fn empty_positional_arg_emits_cli_parse_envelope_247() {
+    // #247: `claw ""` must classify as `cli_parse`, not `unknown`. The
+    // message itself embeds a ``run `claw --help`` pointer so the explicit
+    // hint field is allowed to remain null to avoid duplication — what
+    // matters for the typed-error contract is that `kind == cli_parse`.
+    let root = unique_temp_dir("247-empty-arg");
+    fs::create_dir_all(&root).expect("temp dir should exist");
+
+    let envelope = assert_json_error_envelope(&root, &["--output-format", "json", ""]);
+    assert_eq!(
+        envelope["kind"], "cli_parse",
+        "empty-prompt error should classify as cli_parse, envelope: {envelope}"
+    );
+    let short = envelope["error"]
+        .as_str()
+        .expect("error field should be a string");
+    assert!(
+        short.starts_with("empty prompt:"),
+        "short reason should preserve the original empty-prompt message, got: {short}"
+    );
+}
+
+#[test]
+fn whitespace_only_positional_arg_emits_cli_parse_envelope_247() {
+    // #247: same rule for `claw "   "` — any whitespace-only prompt must
+    // flow through the empty-prompt path and classify as `cli_parse`.
+    let root = unique_temp_dir("247-whitespace-arg");
+    fs::create_dir_all(&root).expect("temp dir should exist");
+
+    let envelope = assert_json_error_envelope(&root, &["--output-format", "json", "   "]);
+    assert_eq!(
+        envelope["kind"], "cli_parse",
+        "whitespace-only prompt should classify as cli_parse, envelope: {envelope}"
+    );
+}
+
+#[test]
+fn unrecognized_argument_still_classifies_as_cli_parse_247_regression_guard() {
+    // #247 regression guard: the new empty-prompt / prompt-subcommand
+    // patterns must NOT hijack the existing #77 unrecognized-argument
+    // classification. `claw doctor --foo` must still surface as cli_parse
+    // with the runbook hint present.
+    let root = unique_temp_dir("247-unrecognized-arg");
+    fs::create_dir_all(&root).expect("temp dir should exist");
+
+    let envelope =
+        assert_json_error_envelope(&root, &["--output-format", "json", "doctor", "--foo"]);
+    assert_eq!(
+        envelope["kind"], "cli_parse",
+        "unrecognized-argument must remain cli_parse, envelope: {envelope}"
+    );
+    assert_eq!(
+        envelope["hint"],
+        "Run `claw --help` for usage.",
+        "unrecognized-argument hint should stay intact, envelope: {envelope}"
+    );
+}
+
 fn assert_json_command_with_env(current_dir: &Path, args: &[&str], envs: &[(&str, &str)]) -> Value {
     let output = run_claw(current_dir, args, envs);
     assert!(

rust/crates/rusty-claude-cli/tests/resume_slash_commands.rs

@@ -180,6 +180,8 @@ fn resume_latest_restores_the_most_recent_managed_session() {
     // given
     let temp_dir = unique_temp_dir("resume-latest");
     let project_dir = temp_dir.join("project");
+    fs::create_dir_all(&project_dir).expect("project dir should exist");
+    let project_dir = fs::canonicalize(&project_dir).unwrap_or(project_dir);
     let store = runtime::SessionStore::from_cwd(&project_dir).expect("session store should build");
     let older_path = store.create_handle("session-older").path;
     let newer_path = store.create_handle("session-newer").path;

rust/crates/tools/src/lib.rs

@@ -4459,6 +4459,7 @@ fn classify_lane_blocker(error: &str) -> LaneEventBlocker {
     LaneEventBlocker {
         failure_class: classify_lane_failure(error),
         detail,
+        subphase: None,
     }
 }
 

src/__init__.py

@@ -5,7 +5,16 @@ from .parity_audit import ParityAuditResult, run_parity_audit
 from .port_manifest import PortManifest, build_port_manifest
 from .query_engine import QueryEnginePort, TurnResult
 from .runtime import PortRuntime, RuntimeSession
-from .session_store import StoredSession, load_session, save_session
+from .session_store import (
+    SessionDeleteError,
+    SessionNotFoundError,
+    StoredSession,
+    delete_session,
+    list_sessions,
+    load_session,
+    save_session,
+    session_exists,
+)
 from .system_init import build_system_init_message
 from .tools import PORTED_TOOLS, build_tool_backlog
 
@@ -15,6 +24,8 @@ __all__ = [
     'PortRuntime',
     'QueryEnginePort',
     'RuntimeSession',
+    'SessionDeleteError',
+    'SessionNotFoundError',
     'StoredSession',
     'TurnResult',
     'PORTED_COMMANDS',
@@ -23,7 +34,10 @@ __all__ = [
     'build_port_manifest',
     'build_system_init_message',
     'build_tool_backlog',
+    'delete_session',
+    'list_sessions',
     'load_session',
     'run_parity_audit',
     'save_session',
+    'session_exists',
 ]

src/main.py

@@ -12,22 +12,48 @@ from .port_manifest import build_port_manifest
 from .query_engine import QueryEnginePort
 from .remote_runtime import run_remote_mode, run_ssh_mode, run_teleport_mode
 from .runtime import PortRuntime
-from .session_store import load_session
+from .session_store import (
+    SessionDeleteError,
+    SessionNotFoundError,
+    delete_session,
+    list_sessions,
+    load_session,
+    session_exists,
+)
 from .setup import run_setup
 from .tool_pool import assemble_tool_pool
 from .tools import execute_tool, get_tool, get_tools, render_tool_index
 
 
+def wrap_json_envelope(data: dict, command: str, exit_code: int = 0) -> dict:
+    """Wrap command output in canonical JSON envelope per SCHEMAS.md."""
+    from datetime import datetime, timezone
+    now_utc = datetime.now(timezone.utc).isoformat(timespec='seconds').replace('+00:00', 'Z')
+    return {
+        'timestamp': now_utc,
+        'command': command,
+        'exit_code': exit_code,
+        'output_format': 'json',
+        'schema_version': '1.0',
+        **data,
+    }
+
+
 def build_parser() -> argparse.ArgumentParser:
     parser = argparse.ArgumentParser(description='Python porting workspace for the Claude Code rewrite effort')
+    # #180: Add --version flag to match canonical CLI contract
+    parser.add_argument('--version', action='version', version='claw-code 1.0.0 (Python harness)')
     subparsers = parser.add_subparsers(dest='command', required=True)
     subparsers.add_parser('summary', help='render a Markdown summary of the Python porting workspace')
     subparsers.add_parser('manifest', help='print the current Python workspace manifest')
     subparsers.add_parser('parity-audit', help='compare the Python workspace against the local ignored TypeScript archive when available')
     subparsers.add_parser('setup-report', help='render the startup/prefetch setup report')
-    subparsers.add_parser('command-graph', help='show command graph segmentation')
-    subparsers.add_parser('tool-pool', help='show assembled tool pool with default settings')
-    subparsers.add_parser('bootstrap-graph', help='show the mirrored bootstrap/runtime graph stages')
+    command_graph_parser = subparsers.add_parser('command-graph', help='show command graph segmentation')
+    command_graph_parser.add_argument('--output-format', choices=['text', 'json'], default='text')
+    tool_pool_parser = subparsers.add_parser('tool-pool', help='show assembled tool pool with default settings')
+    tool_pool_parser.add_argument('--output-format', choices=['text', 'json'], default='text')
+    bootstrap_graph_parser = subparsers.add_parser('bootstrap-graph', help='show the mirrored bootstrap/runtime graph stages')
+    bootstrap_graph_parser.add_argument('--output-format', choices=['text', 'json'], default='text')
     list_parser = subparsers.add_parser('subsystems', help='list the current Python modules in the workspace')
     list_parser.add_argument('--limit', type=int, default=32)
 
@@ -48,22 +74,104 @@ def build_parser() -> argparse.ArgumentParser:
     route_parser = subparsers.add_parser('route', help='route a prompt across mirrored command/tool inventories')
     route_parser.add_argument('prompt')
     route_parser.add_argument('--limit', type=int, default=5)
+    # #168: parity with show-command/show-tool/session-lifecycle CLI family
+    route_parser.add_argument('--output-format', choices=['text', 'json'], default='text')
 
     bootstrap_parser = subparsers.add_parser('bootstrap', help='build a runtime-style session report from the mirrored inventories')
     bootstrap_parser.add_argument('prompt')
     bootstrap_parser.add_argument('--limit', type=int, default=5)
+    # #168: parity with CLI family
+    bootstrap_parser.add_argument('--output-format', choices=['text', 'json'], default='text')
 
     loop_parser = subparsers.add_parser('turn-loop', help='run a small stateful turn loop for the mirrored runtime')
     loop_parser.add_argument('prompt')
     loop_parser.add_argument('--limit', type=int, default=5)
     loop_parser.add_argument('--max-turns', type=int, default=3)
     loop_parser.add_argument('--structured-output', action='store_true')
+    loop_parser.add_argument(
+        '--timeout-seconds',
+        type=float,
+        default=None,
+        help='total wall-clock budget across all turns (#161). Default: unbounded.',
+    )
+    loop_parser.add_argument(
+        '--continuation-prompt',
+        default=None,
+        help=(
+            'prompt to submit on turns after the first (#163). Default: None '
+            '(loop stops after turn 0). Replaces the deprecated implicit "[turn N]" '
+            'suffix that used to pollute the transcript.'
+        ),
+    )
+    loop_parser.add_argument(
+        '--output-format',
+        choices=['text', 'json'],
+        default='text',
+        help='output format (#164 Stage B: JSON includes cancel_observed per turn)',
+    )
 
-    flush_parser = subparsers.add_parser('flush-transcript', help='persist and flush a temporary session transcript')
+    flush_parser = subparsers.add_parser(
+        'flush-transcript',
+        help='persist and flush a temporary session transcript (#160/#166: claw-native session API)',
+    )
     flush_parser.add_argument('prompt')
+    flush_parser.add_argument(
+        '--directory', help='session storage directory (default: .port_sessions)'
+    )
+    flush_parser.add_argument(
+        '--output-format',
+        choices=['text', 'json'],
+        default='text',
+        help='output format',
+    )
+    flush_parser.add_argument(
+        '--session-id',
+        help='deterministic session ID (default: auto-generated UUID)',
+    )
 
-    load_session_parser = subparsers.add_parser('load-session', help='load a previously persisted session')
+    load_session_parser = subparsers.add_parser(
+        'load-session',
+        help='load a previously persisted session (#160/#165: claw-native session API)',
+    )
     load_session_parser.add_argument('session_id')
+    load_session_parser.add_argument(
+        '--directory', help='session storage directory (default: .port_sessions)'
+    )
+    load_session_parser.add_argument(
+        '--output-format',
+        choices=['text', 'json'],
+        default='text',
+        help='output format',
+    )
+
+    list_sessions_parser = subparsers.add_parser(
+        'list-sessions',
+        help='enumerate stored session IDs (#160: claw-native session API)',
+    )
+    list_sessions_parser.add_argument(
+        '--directory', help='session storage directory (default: .port_sessions)'
+    )
+    list_sessions_parser.add_argument(
+        '--output-format',
+        choices=['text', 'json'],
+        default='text',
+        help='output format',
+    )
+
+    delete_session_parser = subparsers.add_parser(
+        'delete-session',
+        help='delete a persisted session (#160: idempotent, race-safe)',
+    )
+    delete_session_parser.add_argument('session_id')
+    delete_session_parser.add_argument(
+        '--directory', help='session storage directory (default: .port_sessions)'
+    )
+    delete_session_parser.add_argument(
+        '--output-format',
+        choices=['text', 'json'],
+        default='text',
+        help='output format',
+    )
 
     remote_parser = subparsers.add_parser('remote-mode', help='simulate remote-control runtime branching')
     remote_parser.add_argument('target')
@@ -78,22 +186,112 @@ def build_parser() -> argparse.ArgumentParser:
 
     show_command = subparsers.add_parser('show-command', help='show one mirrored command entry by exact name')
     show_command.add_argument('name')
+    show_command.add_argument('--output-format', choices=['text', 'json'], default='text')
     show_tool = subparsers.add_parser('show-tool', help='show one mirrored tool entry by exact name')
     show_tool.add_argument('name')
+    show_tool.add_argument('--output-format', choices=['text', 'json'], default='text')
 
     exec_command_parser = subparsers.add_parser('exec-command', help='execute a mirrored command shim by exact name')
     exec_command_parser.add_argument('name')
     exec_command_parser.add_argument('prompt')
+    # #168: parity with CLI family
+    exec_command_parser.add_argument('--output-format', choices=['text', 'json'], default='text')
 
     exec_tool_parser = subparsers.add_parser('exec-tool', help='execute a mirrored tool shim by exact name')
     exec_tool_parser.add_argument('name')
     exec_tool_parser.add_argument('payload')
+    # #168: parity with CLI family
+    exec_tool_parser.add_argument('--output-format', choices=['text', 'json'], default='text')
     return parser
 
 
+class _ArgparseError(Exception):
+    """#179: internal exception capturing argparse's real error message.
+
+    Subclassed ArgumentParser raises this instead of printing + exiting,
+    so JSON mode can preserve the actual error (e.g. 'the following arguments
+    are required: session_id') in the envelope.
+    """
+    def __init__(self, message: str) -> None:
+        super().__init__(message)
+        self.message = message
+
+
+def _emit_parse_error_envelope(argv: list[str], message: str) -> None:
+    """#178/#179: emit JSON envelope for argparse-level errors when --output-format json is requested.
+
+    Pre-scans argv for --output-format json. If found, prints a parse-error envelope
+    to stdout (per SCHEMAS.md 'error' envelope shape) instead of letting argparse
+    dump help text to stderr. This preserves the JSON contract for claws that can't
+    parse argparse usage messages.
+
+    #179 update: `message` now carries argparse's actual error text, not a generic
+    rejection string. Stderr is fully suppressed in JSON mode.
+    """
+    import json
+    # Extract the attempted command (argv[0] is the first positional)
+    attempted = argv[0] if argv and not argv[0].startswith('-') else '<missing>'
+    envelope = wrap_json_envelope(
+        {
+            'error': {
+                'kind': 'parse',
+                'operation': 'argparse',
+                'target': attempted,
+                'retryable': False,
+                'message': message,
+                'hint': 'run with no arguments to see available subcommands',
+            },
+        },
+        command=attempted,
+        exit_code=1,
+    )
+    print(json.dumps(envelope))
+
+
+def _wants_json_output(argv: list[str]) -> bool:
+    """#178: check if argv contains --output-format json anywhere (for parse-error routing)."""
+    for i, arg in enumerate(argv):
+        if arg == '--output-format' and i + 1 < len(argv) and argv[i + 1] == 'json':
+            return True
+        if arg == '--output-format=json':
+            return True
+    return False
+
+
 def main(argv: list[str] | None = None) -> int:
+    import sys
+    if argv is None:
+        argv = sys.argv[1:]
     parser = build_parser()
-    args = parser.parse_args(argv)
+    json_mode = _wants_json_output(argv)
+    # #178/#179: capture argparse errors with real message and emit JSON envelope
+    # when --output-format json is requested. In JSON mode, stderr is silenced
+    # so claws only see the envelope on stdout.
+    if json_mode:
+        # Monkey-patch parser.error to raise instead of print+exit. This preserves
+        # the original error message text (e.g. 'argument X: invalid choice: ...').
+        original_error = parser.error
+        def _json_mode_error(message: str) -> None:
+            raise _ArgparseError(message)
+        parser.error = _json_mode_error  # type: ignore[method-assign]
+        # Also patch all subparsers
+        for action in parser._actions:
+            if hasattr(action, 'choices') and isinstance(action.choices, dict):
+                for subp in action.choices.values():
+                    subp.error = _json_mode_error  # type: ignore[method-assign]
+        try:
+            args = parser.parse_args(argv)
+        except _ArgparseError as err:
+            _emit_parse_error_envelope(argv, err.message)
+            return 1
+        except SystemExit as exc:
+            # Defensive: if argparse exits via some other path (e.g. --help in JSON mode)
+            if exc.code != 0:
+                _emit_parse_error_envelope(argv, 'argparse exited with non-zero code')
+                return 1
+            raise
+    else:
+        args = parser.parse_args(argv)
     manifest = build_port_manifest()
     if args.command == 'summary':
         print(QueryEnginePort(manifest).render_summary())
@@ -108,13 +306,44 @@ def main(argv: list[str] | None = None) -> int:
         print(run_setup().as_markdown())
         return 0
     if args.command == 'command-graph':
-        print(build_command_graph().as_markdown())
+        graph = build_command_graph()
+        if args.output_format == 'json':
+            import json
+            envelope = {
+                'builtins_count': len(graph.builtins),
+                'plugin_like_count': len(graph.plugin_like),
+                'skill_like_count': len(graph.skill_like),
+                'total_count': len(graph.flattened()),
+                'builtins': [{'name': m.name, 'source_hint': m.source_hint} for m in graph.builtins],
+                'plugin_like': [{'name': m.name, 'source_hint': m.source_hint} for m in graph.plugin_like],
+                'skill_like': [{'name': m.name, 'source_hint': m.source_hint} for m in graph.skill_like],
+            }
+            print(json.dumps(wrap_json_envelope(envelope, args.command)))
+        else:
+            print(graph.as_markdown())
         return 0
     if args.command == 'tool-pool':
-        print(assemble_tool_pool().as_markdown())
+        pool = assemble_tool_pool()
+        if args.output_format == 'json':
+            import json
+            envelope = {
+                'simple_mode': pool.simple_mode,
+                'include_mcp': pool.include_mcp,
+                'tool_count': len(pool.tools),
+                'tools': [{'name': t.name, 'source_hint': t.source_hint} for t in pool.tools],
+            }
+            print(json.dumps(wrap_json_envelope(envelope, args.command)))
+        else:
+            print(pool.as_markdown())
         return 0
     if args.command == 'bootstrap-graph':
-        print(build_bootstrap_graph().as_markdown())
+        graph = build_bootstrap_graph()
+        if args.output_format == 'json':
+            import json
+            envelope = {'stages': graph.as_markdown().split('\n'), 'note': 'bootstrap-graph is markdown-only in this version'}
+            print(json.dumps(wrap_json_envelope(envelope, args.command)))
+        else:
+            print(graph.as_markdown())
         return 0
     if args.command == 'subsystems':
         for subsystem in manifest.top_level_modules[: args.limit]:
@@ -141,6 +370,25 @@ def main(argv: list[str] | None = None) -> int:
         return 0
     if args.command == 'route':
         matches = PortRuntime().route_prompt(args.prompt, limit=args.limit)
+        # #168: JSON envelope for machine parsing
+        if args.output_format == 'json':
+            import json
+            envelope = {
+                'prompt': args.prompt,
+                'limit': args.limit,
+                'match_count': len(matches),
+                'matches': [
+                    {
+                        'kind': m.kind,
+                        'name': m.name,
+                        'score': m.score,
+                        'source_hint': m.source_hint,
+                    }
+                    for m in matches
+                ],
+            }
+            print(json.dumps(wrap_json_envelope(envelope, args.command)))
+            return 0
         if not matches:
             print('No mirrored command/tool matches found.')
             return 0
@@ -148,25 +396,220 @@ def main(argv: list[str] | None = None) -> int:
             print(f'{match.kind}\t{match.name}\t{match.score}\t{match.source_hint}')
         return 0
     if args.command == 'bootstrap':
-        print(PortRuntime().bootstrap_session(args.prompt, limit=args.limit).as_markdown())
+        session = PortRuntime().bootstrap_session(args.prompt, limit=args.limit)
+        # #168: JSON envelope for machine parsing
+        if args.output_format == 'json':
+            import json
+            envelope = {
+                'prompt': session.prompt,
+                'limit': args.limit,
+                'setup': {
+                    'python_version': session.setup.python_version,
+                    'implementation': session.setup.implementation,
+                    'platform_name': session.setup.platform_name,
+                    'test_command': session.setup.test_command,
+                },
+                'routed_matches': [
+                    {
+                        'kind': m.kind,
+                        'name': m.name,
+                        'score': m.score,
+                        'source_hint': m.source_hint,
+                    }
+                    for m in session.routed_matches
+                ],
+                'command_execution_messages': list(session.command_execution_messages),
+                'tool_execution_messages': list(session.tool_execution_messages),
+                'turn': {
+                    'prompt': session.turn_result.prompt,
+                    'output': session.turn_result.output,
+                    'stop_reason': session.turn_result.stop_reason,
+                    'cancel_observed': session.turn_result.cancel_observed,
+                },
+                'persisted_session_path': session.persisted_session_path,
+            }
+            print(json.dumps(wrap_json_envelope(envelope, args.command)))
+            return 0
+        print(session.as_markdown())
         return 0
     if args.command == 'turn-loop':
-        results = PortRuntime().run_turn_loop(args.prompt, limit=args.limit, max_turns=args.max_turns, structured_output=args.structured_output)
+        results = PortRuntime().run_turn_loop(
+            args.prompt,
+            limit=args.limit,
+            max_turns=args.max_turns,
+            structured_output=args.structured_output,
+            timeout_seconds=args.timeout_seconds,
+            continuation_prompt=args.continuation_prompt,
+        )
+        # Exit 2 when a timeout terminated the loop so claws can distinguish
+        # 'ran to completion' from 'hit wall-clock budget'.
+        loop_exit_code = 2 if results and results[-1].stop_reason == 'timeout' else 0
+        if args.output_format == 'json':
+            # #164 Stage B + #173: JSON envelope with per-turn cancel_observed
+            # Promotes turn-loop from OPT_OUT to CLAWABLE surface.
+            import json
+            envelope = {
+                'prompt': args.prompt,
+                'max_turns': args.max_turns,
+                'turns_completed': len(results),
+                'timeout_seconds': args.timeout_seconds,
+                'continuation_prompt': args.continuation_prompt,
+                'turns': [
+                    {
+                        'prompt': r.prompt,
+                        'output': r.output,
+                        'stop_reason': r.stop_reason,
+                        'cancel_observed': r.cancel_observed,
+                        'matched_commands': list(r.matched_commands),
+                        'matched_tools': list(r.matched_tools),
+                    }
+                    for r in results
+                ],
+                'final_stop_reason': results[-1].stop_reason if results else None,
+                'final_cancel_observed': results[-1].cancel_observed if results else False,
+            }
+            print(json.dumps(wrap_json_envelope(envelope, args.command, exit_code=loop_exit_code)))
+            return loop_exit_code
         for idx, result in enumerate(results, start=1):
             print(f'## Turn {idx}')
             print(result.output)
             print(f'stop_reason={result.stop_reason}')
-        return 0
+        return loop_exit_code
     if args.command == 'flush-transcript':
+        from pathlib import Path as _Path
         engine = QueryEnginePort.from_workspace()
+        # #166: allow deterministic session IDs for claw checkpointing/replay.
+        # When unset, the engine's auto-generated UUID is used (backward compat).
+        if args.session_id:
+            engine.session_id = args.session_id
         engine.submit_message(args.prompt)
-        path = engine.persist_session()
-        print(path)
-        print(f'flushed={engine.transcript_store.flushed}')
+        directory = _Path(args.directory) if args.directory else None
+        path = engine.persist_session(directory)
+        if args.output_format == 'json':
+            import json as _json
+            _env = {
+                'session_id': engine.session_id,
+                'path': path,
+                'flushed': engine.transcript_store.flushed,
+                'messages_count': len(engine.mutable_messages),
+                'input_tokens': engine.total_usage.input_tokens,
+                'output_tokens': engine.total_usage.output_tokens,
+            }
+            print(_json.dumps(wrap_json_envelope(_env, args.command)))
+        else:
+            # #166: legacy text output preserved byte-for-byte for backward compat.
+            print(path)
+            print(f'flushed={engine.transcript_store.flushed}')
         return 0
     if args.command == 'load-session':
-        session = load_session(args.session_id)
-        print(f'{session.session_id}\n{len(session.messages)} messages\nin={session.input_tokens} out={session.output_tokens}')
+        from pathlib import Path as _Path
+        directory = _Path(args.directory) if args.directory else None
+        # #165: catch typed SessionNotFoundError + surface a JSON error envelope
+        # matching the delete-session contract shape. No more raw tracebacks.
+        try:
+            session = load_session(args.session_id, directory)
+        except SessionNotFoundError as exc:
+            if args.output_format == 'json':
+                import json as _json
+                resolved_dir = str(directory) if directory else '.port_sessions'
+                _env = {
+                    'session_id': args.session_id,
+                    'loaded': False,
+                    'error': {
+                        'kind': 'session_not_found',
+                        'message': str(exc),
+                        'directory': resolved_dir,
+                        'retryable': False,
+                    },
+                }
+                print(_json.dumps(wrap_json_envelope(_env, args.command, exit_code=1)))
+            else:
+                print(f'error: {exc}')
+            return 1
+        except (OSError, ValueError) as exc:
+            # Corrupted session file, IO error, JSON decode error — distinct
+            # from 'not found'. Callers may retry here (fs glitch).
+            if args.output_format == 'json':
+                import json as _json
+                resolved_dir = str(directory) if directory else '.port_sessions'
+                _env = {
+                    'session_id': args.session_id,
+                    'loaded': False,
+                    'error': {
+                        'kind': 'session_load_failed',
+                        'message': str(exc),
+                        'directory': resolved_dir,
+                        'retryable': True,
+                    },
+                }
+                print(_json.dumps(wrap_json_envelope(_env, args.command, exit_code=1)))
+            else:
+                print(f'error: {exc}')
+            return 1
+        if args.output_format == 'json':
+            import json as _json
+            _env = {
+                'session_id': session.session_id,
+                'loaded': True,
+                'messages_count': len(session.messages),
+                'input_tokens': session.input_tokens,
+                'output_tokens': session.output_tokens,
+            }
+            print(_json.dumps(wrap_json_envelope(_env, args.command)))
+        else:
+            print(f'{session.session_id}\n{len(session.messages)} messages\nin={session.input_tokens} out={session.output_tokens}')
+        return 0
+    if args.command == 'list-sessions':
+        from pathlib import Path as _Path
+        directory = _Path(args.directory) if args.directory else None
+        ids = list_sessions(directory)
+        if args.output_format == 'json':
+            import json as _json
+            _env = {'sessions': ids, 'count': len(ids)}
+            print(_json.dumps(wrap_json_envelope(_env, args.command)))
+        else:
+            if not ids:
+                print('(no sessions)')
+            else:
+                for sid in ids:
+                    print(sid)
+        return 0
+    if args.command == 'delete-session':
+        from pathlib import Path as _Path
+        directory = _Path(args.directory) if args.directory else None
+        try:
+            deleted = delete_session(args.session_id, directory)
+        except SessionDeleteError as exc:
+            if args.output_format == 'json':
+                import json as _json
+                _env = {
+                    'session_id': args.session_id,
+                    'deleted': False,
+                    'error': {
+                        'kind': 'session_delete_failed',
+                        'message': str(exc),
+                        'retryable': True,
+                    },
+                }
+                print(_json.dumps(wrap_json_envelope(_env, args.command, exit_code=1)))
+            else:
+                print(f'error: {exc}')
+            return 1
+        if args.output_format == 'json':
+            import json as _json
+            _env = {
+                'session_id': args.session_id,
+                'deleted': deleted,
+                'status': 'deleted' if deleted else 'not_found',
+            }
+            print(_json.dumps(wrap_json_envelope(_env, args.command)))
+        else:
+            if deleted:
+                print(f'deleted: {args.session_id}')
+            else:
+                print(f'not found: {args.session_id}')
+        # Exit 0 for both cases — delete_session is idempotent,
+        # not-found is success from a cleanup perspective
         return 0
     if args.command == 'remote-mode':
         print(run_remote_mode(args.target).as_text())
@@ -186,25 +629,123 @@ def main(argv: list[str] | None = None) -> int:
     if args.command == 'show-command':
         module = get_command(args.name)
         if module is None:
-            print(f'Command not found: {args.name}')
+            if args.output_format == 'json':
+                import json
+                error_envelope = {
+                    'name': args.name,
+                    'found': False,
+                    'error': {
+                        'kind': 'command_not_found',
+                        'message': f'Unknown command: {args.name}',
+                        'retryable': False,
+                    },
+                }
+                print(json.dumps(wrap_json_envelope(error_envelope, args.command, exit_code=1)))
+            else:
+                print(f'Command not found: {args.name}')
             return 1
-        print('\n'.join([module.name, module.source_hint, module.responsibility]))
+        if args.output_format == 'json':
+            import json
+            output = {
+                'name': module.name,
+                'found': True,
+                'source_hint': module.source_hint,
+                'responsibility': module.responsibility,
+            }
+            print(json.dumps(wrap_json_envelope(output, args.command)))
+        else:
+            print('\n'.join([module.name, module.source_hint, module.responsibility]))
         return 0
     if args.command == 'show-tool':
         module = get_tool(args.name)
         if module is None:
-            print(f'Tool not found: {args.name}')
+            if args.output_format == 'json':
+                import json
+                error_envelope = {
+                    'name': args.name,
+                    'found': False,
+                    'error': {
+                        'kind': 'tool_not_found',
+                        'message': f'Unknown tool: {args.name}',
+                        'retryable': False,
+                    },
+                }
+                print(json.dumps(wrap_json_envelope(error_envelope, args.command, exit_code=1)))
+            else:
+                print(f'Tool not found: {args.name}')
             return 1
-        print('\n'.join([module.name, module.source_hint, module.responsibility]))
+        if args.output_format == 'json':
+            import json
+            output = {
+                'name': module.name,
+                'found': True,
+                'source_hint': module.source_hint,
+                'responsibility': module.responsibility,
+            }
+            print(json.dumps(wrap_json_envelope(output, args.command)))
+        else:
+            print('\n'.join([module.name, module.source_hint, module.responsibility]))
         return 0
     if args.command == 'exec-command':
         result = execute_command(args.name, args.prompt)
-        print(result.message)
-        return 0 if result.handled else 1
+        # #168: JSON envelope with typed not-found error
+        # #181: envelope exit_code must match process exit code
+        exit_code = 0 if result.handled else 1
+        if args.output_format == 'json':
+            import json
+            if not result.handled:
+                envelope = {
+                    'name': args.name,
+                    'prompt': args.prompt,
+                    'handled': False,
+                    'error': {
+                        'kind': 'command_not_found',
+                        'message': result.message,
+                        'retryable': False,
+                    },
+                }
+            else:
+                envelope = {
+                    'name': result.name,
+                    'prompt': result.prompt,
+                    'source_hint': result.source_hint,
+                    'handled': True,
+                    'message': result.message,
+                }
+            print(json.dumps(wrap_json_envelope(envelope, args.command, exit_code=exit_code)))
+        else:
+            print(result.message)
+        return exit_code
     if args.command == 'exec-tool':
         result = execute_tool(args.name, args.payload)
-        print(result.message)
-        return 0 if result.handled else 1
+        # #168: JSON envelope with typed not-found error
+        # #181: envelope exit_code must match process exit code
+        exit_code = 0 if result.handled else 1
+        if args.output_format == 'json':
+            import json
+            if not result.handled:
+                envelope = {
+                    'name': args.name,
+                    'payload': args.payload,
+                    'handled': False,
+                    'error': {
+                        'kind': 'tool_not_found',
+                        'message': result.message,
+                        'retryable': False,
+                    },
+                }
+            else:
+                envelope = {
+                    'name': result.name,
+                    'payload': result.payload,
+                    'source_hint': result.source_hint,
+                    'handled': True,
+                    'message': result.message,
+                }
+            print(json.dumps(wrap_json_envelope(envelope, args.command, exit_code=exit_code)))
+        else:
+            print(result.message)
+        return exit_code
     parser.error(f'unknown command: {args.command}')
     return 2
 

src/query_engine.py

@@ -1,6 +1,7 @@
 from __future__ import annotations
 
 import json
+import threading
 from dataclasses import dataclass, field
 from uuid import uuid4
 
@@ -30,6 +31,7 @@ class TurnResult:
     permission_denials: tuple[PermissionDenial, ...]
     usage: UsageSummary
     stop_reason: str
+    cancel_observed: bool = False
 
 
 @dataclass
@@ -64,7 +66,59 @@ class QueryEnginePort:
         matched_commands: tuple[str, ...] = (),
         matched_tools: tuple[str, ...] = (),
         denied_tools: tuple[PermissionDenial, ...] = (),
+        cancel_event: threading.Event | None = None,
     ) -> TurnResult:
+        """Submit a prompt and return a TurnResult.
+
+        #164 Stage A: cooperative cancellation via cancel_event.
+
+        The cancel_event argument (added for #164) lets a caller request early
+        termination at a safe point. When set before the pre-mutation commit
+        stage, submit_message returns early with ``stop_reason='cancelled'``
+        and the engine's state (mutable_messages, transcript_store,
+        permission_denials, total_usage) is left **exactly as it was on
+        entry**. This closes the #161 follow-up gap: before this change, a
+        wedged provider thread could finish executing and silently mutate
+        state after the caller had already observed ``stop_reason='timeout'``,
+        giving the session a ghost turn the caller never acknowledged.
+
+        Contract:
+          - cancel_event is None (default) — legacy behaviour, no checks.
+          - cancel_event set **before** budget check — returns 'cancelled'
+            immediately; no output synthesis, no projection, no mutation.
+          - cancel_event set **between** budget check and commit — returns
+            'cancelled' with state intact.
+          - cancel_event set **after** commit — not observable; the turn is
+            already committed and the caller sees 'completed'. Cancellation
+            is a *safe point* mechanism, not preemption. This is the honest
+            limit of cooperative cancellation in Python threading land.
+
+        Stop reason taxonomy after #164 Stage A:
+          - 'completed'            — turn committed, state mutated exactly once
+          - 'max_budget_reached'   — overflow, state unchanged (#162)
+          - 'max_turns_reached'    — capacity exceeded, state unchanged
+          - 'cancelled'            — cancel_event observed, state unchanged
+          - 'timeout'              — synthesised by runtime, not engine (#161)
+
+        Callers that care about deadline-driven cancellation (run_turn_loop)
+        can now request cleanup by setting the event on timeout — the next
+        submit_message on the same engine will observe it at the start and
+        return 'cancelled' without touching state, even if the previous call
+        is still wedged in provider IO.
+        """
+        # #164 Stage A: earliest safe cancellation point. No output synthesis,
+        # no budget projection, no mutation — just an immediate clean return.
+        if cancel_event is not None and cancel_event.is_set():
+            return TurnResult(
+                prompt=prompt,
+                output='',
+                matched_commands=matched_commands,
+                matched_tools=matched_tools,
+                permission_denials=denied_tools,
+                usage=self.total_usage,  # unchanged
+                stop_reason='cancelled',
+            )
+
         if len(self.mutable_messages) >= self.config.max_turns:
             output = f'Max turns reached before processing prompt: {prompt}'
             return TurnResult(
@@ -85,9 +139,40 @@ class QueryEnginePort:
         ]
         output = self._format_output(summary_lines)
         projected_usage = self.total_usage.add_turn(prompt, output)
-        stop_reason = 'completed'
+
+        # #162: budget check must precede mutation. Previously this block set
+        # stop_reason='max_budget_reached' but still appended the overflow turn
+        # to mutable_messages / transcript_store / permission_denials, corrupting
+        # the session for any caller that persisted it afterwards. The overflow
+        # prompt was effectively committed even though the TurnResult signalled
+        # rejection. Now we early-return with pre-mutation state intact so
+        # callers can safely retry with a smaller prompt or a fresh budget.
         if projected_usage.input_tokens + projected_usage.output_tokens > self.config.max_budget_tokens:
-            stop_reason = 'max_budget_reached'
+            return TurnResult(
+                prompt=prompt,
+                output=output,
+                matched_commands=matched_commands,
+                matched_tools=matched_tools,
+                permission_denials=denied_tools,
+                usage=self.total_usage,  # unchanged — overflow turn was rejected
+                stop_reason='max_budget_reached',
+            )
+
+        # #164 Stage A: second safe cancellation point. Projection is done
+        # but nothing has been committed yet. If the caller cancelled while
+        # we were building output / computing budget, honour it here — still
+        # no mutation.
+        if cancel_event is not None and cancel_event.is_set():
+            return TurnResult(
+                prompt=prompt,
+                output=output,
+                matched_commands=matched_commands,
+                matched_tools=matched_tools,
+                permission_denials=denied_tools,
+                usage=self.total_usage,  # unchanged
+                stop_reason='cancelled',
+            )
+
         self.mutable_messages.append(prompt)
         self.transcript_store.append(prompt)
         self.permission_denials.extend(denied_tools)
@@ -100,7 +185,7 @@ class QueryEnginePort:
             matched_tools=matched_tools,
             permission_denials=denied_tools,
             usage=self.total_usage,
-            stop_reason=stop_reason,
+            stop_reason='completed',
         )
 
     def stream_submit_message(
@@ -137,7 +222,19 @@ class QueryEnginePort:
     def flush_transcript(self) -> None:
         self.transcript_store.flush()
 
-    def persist_session(self) -> str:
+    def persist_session(self, directory: 'Path | None' = None) -> str:
+        """Flush the transcript and save the session to disk.
+
+        Args:
+            directory: Optional override for the storage directory. When None
+                (default, for backward compat), uses the default location
+                (``.port_sessions`` in CWD). When set, passes through to
+                ``save_session`` which already supports directory overrides.
+
+        #166: added directory parameter to match the session-lifecycle CLI
+        surface established by #160/#165. Claws running out-of-tree can now
+        redirect session creation to a workspace-specific dir without chdir.
+        """
         self.flush_transcript()
         path = save_session(
             StoredSession(
@@ -145,7 +242,8 @@ class QueryEnginePort:
                 messages=tuple(self.mutable_messages),
                 input_tokens=self.total_usage.input_tokens,
                 output_tokens=self.total_usage.output_tokens,
-            )
+            ),
+            directory,
         )
         return str(path)
 

src/runtime.py

@@ -1,11 +1,14 @@
 from __future__ import annotations
 
+import threading
+import time
+from concurrent.futures import ThreadPoolExecutor, TimeoutError as FuturesTimeoutError
 from dataclasses import dataclass
 
 from .commands import PORTED_COMMANDS
 from .context import PortContext, build_port_context, render_context
 from .history import HistoryLog
-from .models import PermissionDenial, PortingModule
+from .models import PermissionDenial, PortingModule, UsageSummary
 from .query_engine import QueryEngineConfig, QueryEnginePort, TurnResult
 from .setup import SetupReport, WorkspaceSetup, run_setup
 from .system_init import build_system_init_message
@@ -151,21 +154,161 @@ class PortRuntime:
             persisted_session_path=persisted_session_path,
         )
 
-    def run_turn_loop(self, prompt: str, limit: int = 5, max_turns: int = 3, structured_output: bool = False) -> list[TurnResult]:
+    def run_turn_loop(
+        self,
+        prompt: str,
+        limit: int = 5,
+        max_turns: int = 3,
+        structured_output: bool = False,
+        timeout_seconds: float | None = None,
+        continuation_prompt: str | None = None,
+    ) -> list[TurnResult]:
+        """Run a multi-turn engine loop with optional wall-clock deadline.
+
+        Args:
+            prompt: The initial prompt to submit.
+            limit: Match routing limit.
+            max_turns: Maximum number of turns before stopping.
+            structured_output: Whether to request structured output.
+            timeout_seconds: Total wall-clock budget across all turns. When the
+                budget is exhausted mid-turn, a synthetic TurnResult with
+                ``stop_reason='timeout'`` is appended and the loop exits.
+                ``None`` (default) preserves legacy unbounded behaviour.
+            continuation_prompt: What to send on turns after the first. When
+                ``None`` (default, #163), the loop stops after turn 0 and the
+                caller decides how to continue. When set, the same text is
+                submitted for every turn after the first, giving claws a clean
+                hook for structured follow-ups (e.g. ``"Continue."``, a
+                routing-planner instruction, or a tool-output cue). Previously
+                the loop silently appended ``" [turn N]"`` to the original
+                prompt, polluting the transcript with harness-generated
+                annotation the model had no way to interpret.
+
+        Returns:
+            A list of TurnResult objects. The final entry's ``stop_reason``
+            distinguishes ``'completed'``, ``'max_turns_reached'``,
+            ``'max_budget_reached'``, or ``'timeout'``.
+
+        #161: prior to this change a hung ``engine.submit_message`` call would
+        block the loop indefinitely with no cancellation path, forcing claws to
+        rely on external watchdogs or OS-level kills. Callers can now enforce a
+        deadline and receive a typed timeout signal instead.
+
+        #163: the old ``f'{prompt} [turn {turn + 1}]'`` suffix was never
+        interpreted by the engine or any system prompt. It looked like a real
+        user turn in ``mutable_messages`` and the transcript, making replay and
+        analysis fragile. Removed entirely; callers supply ``continuation_prompt``
+        for meaningful follow-ups or let the loop stop after turn 0.
+        """
         engine = QueryEnginePort.from_workspace()
         engine.config = QueryEngineConfig(max_turns=max_turns, structured_output=structured_output)
         matches = self.route_prompt(prompt, limit=limit)
         command_names = tuple(match.name for match in matches if match.kind == 'command')
         tool_names = tuple(match.name for match in matches if match.kind == 'tool')
+        # #159: infer permission denials from the routed matches, not hardcoded empty tuple.
+        # Multi-turn sessions must have the same security posture as bootstrap_session.
+        denied_tools = tuple(self._infer_permission_denials(matches))
         results: list[TurnResult] = []
-        for turn in range(max_turns):
-            turn_prompt = prompt if turn == 0 else f'{prompt} [turn {turn + 1}]'
-            result = engine.submit_message(turn_prompt, command_names, tool_names, ())
-            results.append(result)
-            if result.stop_reason != 'completed':
-                break
+        deadline = time.monotonic() + timeout_seconds if timeout_seconds is not None else None
+        # #164 Stage A: shared cancel_event signals cooperative cancellation
+        # across turns. On timeout we set() it so any still-running
+        # submit_message call (or the next one on the same engine) observes
+        # the cancel at a safe checkpoint and returns stop_reason='cancelled'
+        # without mutating state. This closes the window where a wedged
+        # provider thread could commit a ghost turn after the caller saw
+        # 'timeout'.
+        cancel_event = threading.Event() if deadline is not None else None
+
+        # ThreadPoolExecutor is reused across turns so we cancel cleanly on exit.
+        executor = ThreadPoolExecutor(max_workers=1) if deadline is not None else None
+        try:
+            for turn in range(max_turns):
+                # #163: no more f'{prompt} [turn N]' suffix injection.
+                # On turn 0 submit the original prompt.
+                # On turn > 0, submit the caller-supplied continuation prompt;
+                # if the caller did not supply one, stop the loop cleanly instead
+                # of fabricating a fake user turn.
+                if turn == 0:
+                    turn_prompt = prompt
+                elif continuation_prompt is not None:
+                    turn_prompt = continuation_prompt
+                else:
+                    break
+
+                if deadline is None:
+                    # Legacy path: unbounded call, preserves existing behaviour exactly.
+                    # #159: pass inferred denied_tools (no longer hardcoded empty tuple)
+                    # #164: cancel_event is None on this path; submit_message skips
+                    # cancellation checks entirely (legacy zero-overhead behaviour).
+                    result = engine.submit_message(turn_prompt, command_names, tool_names, denied_tools)
+                else:
+                    remaining = deadline - time.monotonic()
+                    if remaining <= 0:
+                        # #164: signal cancel for any in-flight/future submit_message
+                        # calls that share this engine. Safe because nothing has been
+                        # submitted yet this turn.
+                        assert cancel_event is not None
+                        cancel_event.set()
+                        results.append(self._build_timeout_result(
+                            turn_prompt, command_names, tool_names,
+                            cancel_observed=cancel_event.is_set()
+                        ))
+                        break
+                    assert executor is not None
+                    future = executor.submit(
+                        engine.submit_message, turn_prompt, command_names, tool_names,
+                        denied_tools, cancel_event,
+                    )
+                    try:
+                        result = future.result(timeout=remaining)
+                    except FuturesTimeoutError:
+                        # #164 Stage A: explicitly signal cancel to the still-running
+                        # submit_message thread. The next time it hits a checkpoint
+                        # (entry or post-budget), it returns 'cancelled' without
+                        # mutating state instead of committing a ghost turn. This
+                        # upgrades #161's best-effort future.cancel() (which only
+                        # cancels pre-start futures) to cooperative mid-flight cancel.
+                        assert cancel_event is not None
+                        cancel_event.set()
+                        future.cancel()
+                        results.append(self._build_timeout_result(
+                            turn_prompt, command_names, tool_names,
+                            cancel_observed=cancel_event.is_set()
+                        ))
+                        break
+
+                results.append(result)
+                if result.stop_reason != 'completed':
+                    break
+        finally:
+            if executor is not None:
+                # wait=False: don't let a hung thread block loop exit indefinitely.
+                # The thread will be reaped when the interpreter shuts down or when
+                # the engine call eventually returns.
+                executor.shutdown(wait=False)
         return results
 
+    @staticmethod
+    def _build_timeout_result(
+        prompt: str,
+        command_names: tuple[str, ...],
+        tool_names: tuple[str, ...],
+        cancel_observed: bool = False,
+    ) -> TurnResult:
+        """Synthesize a TurnResult representing a wall-clock timeout (#161).
+        #164 Stage B: cancel_observed signals cancellation event was set.
+        """
+        return TurnResult(
+            prompt=prompt,
+            output='Wall-clock timeout exceeded before turn completed.',
+            matched_commands=command_names,
+            matched_tools=tool_names,
+            permission_denials=(),
+            usage=UsageSummary(),
+            stop_reason='timeout',
+            cancel_observed=cancel_observed,
+        )
+
     def _infer_permission_denials(self, matches: list[RoutedMatch]) -> list[PermissionDenial]:
         denials: list[PermissionDenial] = []
         for match in matches:

src/session_store.py

@@ -26,10 +26,96 @@ def save_session(session: StoredSession, directory: Path | None = None) -> Path:
 
 def load_session(session_id: str, directory: Path | None = None) -> StoredSession:
     target_dir = directory or DEFAULT_SESSION_DIR
-    data = json.loads((target_dir / f'{session_id}.json').read_text())
+    try:
+        data = json.loads((target_dir / f'{session_id}.json').read_text())
+    except FileNotFoundError:
+        raise SessionNotFoundError(f'session {session_id!r} not found in {target_dir}') from None
     return StoredSession(
         session_id=data['session_id'],
         messages=tuple(data['messages']),
         input_tokens=data['input_tokens'],
         output_tokens=data['output_tokens'],
     )
+
+
+class SessionNotFoundError(KeyError):
+    """Raised when a session does not exist in the store."""
+    pass
+
+
+def list_sessions(directory: Path | None = None) -> list[str]:
+    """List all stored session IDs in the target directory.
+    
+    Args:
+        directory: Target session directory. Defaults to DEFAULT_SESSION_DIR.
+    
+    Returns:
+        Sorted list of session IDs (JSON filenames without .json extension).
+    """
+    target_dir = directory or DEFAULT_SESSION_DIR
+    if not target_dir.exists():
+        return []
+    return sorted(p.stem for p in target_dir.glob('*.json'))
+
+
+def session_exists(session_id: str, directory: Path | None = None) -> bool:
+    """Check if a session exists without raising an error.
+    
+    Args:
+        session_id: The session ID to check.
+        directory: Target session directory. Defaults to DEFAULT_SESSION_DIR.
+    
+    Returns:
+        True if the session file exists, False otherwise.
+    """
+    target_dir = directory or DEFAULT_SESSION_DIR
+    return (target_dir / f'{session_id}.json').exists()
+
+
+class SessionDeleteError(OSError):
+    """Raised when a session file exists but cannot be removed (permission, IO error).
+    
+    Distinct from SessionNotFoundError: this means the session was present but
+    deletion failed mid-operation. Callers can retry or escalate.
+    """
+    pass
+
+
+def delete_session(session_id: str, directory: Path | None = None) -> bool:
+    """Delete a session file from the store.
+    
+    Contract:
+    - **Idempotent**: `delete_session(x)` followed by `delete_session(x)` is safe.
+      Second call returns False (not found), does not raise.
+    - **Race-safe**: Uses `missing_ok=True` on unlink to avoid TOCTOU between
+      exists-check and unlink. Concurrent deletion by another process is
+      treated as a no-op success (returns False for the losing caller).
+    - **Partial-failure surfaced**: If the file exists but cannot be removed
+      (permission denied, filesystem error, directory instead of file), raises
+      `SessionDeleteError` wrapping the underlying OSError. The session store
+      may be in an inconsistent state; caller should retry or escalate.
+    
+    Args:
+        session_id: The session ID to delete.
+        directory: Target session directory. Defaults to DEFAULT_SESSION_DIR.
+    
+    Returns:
+        True if this call deleted the session file.
+        False if the session did not exist (either never existed or was already deleted).
+    
+    Raises:
+        SessionDeleteError: if the session existed but deletion failed.
+    """
+    target_dir = directory or DEFAULT_SESSION_DIR
+    path = target_dir / f'{session_id}.json'
+    try:
+        # Python 3.8+: missing_ok=True avoids TOCTOU race
+        path.unlink(missing_ok=False)
+        return True
+    except FileNotFoundError:
+        # Either never existed or was concurrently deleted — both are no-ops
+        return False
+    except (PermissionError, IsADirectoryError, OSError) as exc:
+        raise SessionDeleteError(
+            f'session {session_id!r} exists in {target_dir} but could not be deleted: {exc}'
+        ) from exc

tests/test_cancel_observed_field.py

@@ -0,0 +1,199 @@
+"""#164 Stage B — cancel_observed field coverage.
+
+Validates that the TurnResult.cancel_observed field correctly signals
+whether cancellation was observed during turn execution.
+
+Test coverage:
+1. Normal completion: cancel_observed=False (no timeout occurred)
+2. Timeout with cancel signaled: cancel_observed=True
+3. bootstrap JSON output exposes the field
+4. turn-loop JSON output exposes cancel_observed per turn
+5. Safe-to-reuse: after timeout with cancel_observed=True,
+   engine can accept fresh messages without state corruption
+"""
+
+from __future__ import annotations
+
+import json
+import subprocess
+import sys
+from pathlib import Path
+
+import pytest
+
+from src.query_engine import QueryEnginePort, TurnResult
+from src.runtime import PortRuntime
+
+
+CLI = [sys.executable, '-m', 'src.main']
+REPO_ROOT = Path(__file__).resolve().parent.parent
+
+
+class TestCancelObservedField:
+    """TurnResult.cancel_observed correctly signals cancellation observation."""
+
+    def test_default_value_is_false(self) -> None:
+        """New TurnResult defaults to cancel_observed=False (backward compat)."""
+        from src.models import UsageSummary
+        result = TurnResult(
+            prompt='test',
+            output='ok',
+            matched_commands=(),
+            matched_tools=(),
+            permission_denials=(),
+            usage=UsageSummary(),
+            stop_reason='completed',
+        )
+        assert result.cancel_observed is False
+
+    def test_explicit_true_preserved(self) -> None:
+        """cancel_observed=True is preserved through construction."""
+        from src.models import UsageSummary
+        result = TurnResult(
+            prompt='test',
+            output='timed out',
+            matched_commands=(),
+            matched_tools=(),
+            permission_denials=(),
+            usage=UsageSummary(),
+            stop_reason='timeout',
+            cancel_observed=True,
+        )
+        assert result.cancel_observed is True
+
+    def test_normal_completion_cancel_observed_false(self) -> None:
+        """Normal turn completion → cancel_observed=False."""
+        runtime = PortRuntime()
+        results = runtime.run_turn_loop('hello', max_turns=1)
+        assert len(results) >= 1
+        assert results[0].cancel_observed is False
+
+    def test_bootstrap_json_includes_cancel_observed(self) -> None:
+        """bootstrap JSON envelope includes cancel_observed in turn result."""
+        result = subprocess.run(
+            CLI + ['bootstrap', 'hello', '--output-format', 'json'],
+            cwd=REPO_ROOT,
+            capture_output=True,
+            text=True,
+        )
+        assert result.returncode == 0
+        envelope = json.loads(result.stdout)
+        assert 'turn' in envelope
+        assert 'cancel_observed' in envelope['turn'], (
+            f"bootstrap turn must include cancel_observed (SCHEMAS.md contract). "
+            f"Got keys: {list(envelope['turn'].keys())}"
+        )
+        # Normal completion → False
+        assert envelope['turn']['cancel_observed'] is False
+
+    def test_turn_loop_json_per_turn_cancel_observed(self) -> None:
+        """turn-loop JSON envelope includes cancel_observed per turn (#164 Stage B closure)."""
+        result = subprocess.run(
+            CLI + ['turn-loop', 'hello', '--max-turns', '1', '--output-format', 'json'],
+            cwd=REPO_ROOT,
+            capture_output=True,
+            text=True,
+        )
+        assert result.returncode == 0, f"stderr: {result.stderr}"
+        envelope = json.loads(result.stdout)
+        # Common fields from wrap_json_envelope
+        assert envelope['command'] == 'turn-loop'
+        assert envelope['schema_version'] == '1.0'
+        # Turn-loop-specific fields
+        assert 'turns' in envelope
+        assert len(envelope['turns']) >= 1
+        for idx, turn in enumerate(envelope['turns']):
+            assert 'cancel_observed' in turn, (
+                f"Turn {idx} missing cancel_observed: {list(turn.keys())}"
+            )
+        # final_cancel_observed convenience field
+        assert 'final_cancel_observed' in envelope
+        assert isinstance(envelope['final_cancel_observed'], bool)
+
+
+class TestCancelObservedSafeReuseSemantics:
+    """After timeout with cancel_observed=True, engine state is safe to reuse."""
+
+    def test_timeout_result_cancel_observed_true_when_signaled(self) -> None:
+        """#164 Stage B: timeout path passes cancel_event.is_set() to result."""
+        # Force a timeout with max_turns=3 and timeout=0.0001 (instant)
+        runtime = PortRuntime()
+        results = runtime.run_turn_loop(
+            'hello', max_turns=3, timeout_seconds=0.0001,
+            continuation_prompt='keep going',
+        )
+        # Last result should be timeout (pre-start path since timeout is instant)
+        assert results, 'timeout path should still produce a result'
+        last = results[-1]
+        assert last.stop_reason == 'timeout'
+        # cancel_observed=True because the timeout path explicitly sets cancel_event
+        assert last.cancel_observed is True, (
+            f"timeout path must signal cancel_observed=True; got {last.cancel_observed}. "
+            f"stop_reason={last.stop_reason}"
+        )
+
+    def test_engine_messages_not_corrupted_by_timeout(self) -> None:
+        """After timeout with cancel_observed, engine.mutable_messages is consistent.
+
+        #164 Stage B contract: safe-to-reuse means after a timeout-with-cancel,
+        the engine has not committed a ghost turn and can accept fresh input.
+        """
+        engine = QueryEnginePort.from_workspace()
+        # Track initial state
+        initial_message_count = len(engine.mutable_messages)
+
+        # Simulate a direct submit_message call with cancellation
+        import threading
+        cancel_event = threading.Event()
+        cancel_event.set()  # Pre-set: first checkpoint fires
+        result = engine.submit_message(
+            'test', ('cmd1',), ('tool1',),
+            denied_tools=(), cancel_event=cancel_event,
+        )
+
+        # Cancelled turn should not commit mutation
+        assert result.stop_reason == 'cancelled', (
+            f"expected cancelled; got {result.stop_reason}"
+        )
+        # mutable_messages should not have grown
+        assert len(engine.mutable_messages) == initial_message_count, (
+            f"engine.mutable_messages grew after cancelled turn "
+            f"(was {initial_message_count}, now {len(engine.mutable_messages)})"
+        )
+
+        # Engine should accept a fresh message now
+        fresh = engine.submit_message('fresh prompt', ('cmd1',), ('tool1',))
+        assert fresh.stop_reason in ('completed', 'max_budget_reached'), (
+            f"expected engine reusable; got {fresh.stop_reason}"
+        )
+
+
+class TestCancelObservedSchemaCompliance:
+    """SCHEMAS.md contract for cancel_observed field."""
+
+    def test_cancel_observed_is_bool_not_nullable(self) -> None:
+        """cancel_observed is always bool (never null/missing) per SCHEMAS.md."""
+        result = subprocess.run(
+            CLI + ['bootstrap', 'test', '--output-format', 'json'],
+            cwd=REPO_ROOT,
+            capture_output=True,
+            text=True,
+        )
+        envelope = json.loads(result.stdout)
+        cancel_observed = envelope['turn']['cancel_observed']
+        assert isinstance(cancel_observed, bool), (
+            f"cancel_observed must be bool; got {type(cancel_observed)}"
+        )
+
+    def test_turn_loop_envelope_has_final_cancel_observed(self) -> None:
+        """turn-loop JSON exposes final_cancel_observed convenience field."""
+        result = subprocess.run(
+            CLI + ['turn-loop', 'test', '--max-turns', '1', '--output-format', 'json'],
+            cwd=REPO_ROOT,
+            capture_output=True,
+            text=True,
+        )
+        assert result.returncode == 0
+        envelope = json.loads(result.stdout)
+        assert 'final_cancel_observed' in envelope
+        assert isinstance(envelope['final_cancel_observed'], bool)

tests/test_cli_parity_audit.py

@@ -0,0 +1,333 @@
+"""Cross-surface CLI parity audit (ROADMAP #171).
+
+Prevents future drift of the unified JSON envelope contract across
+claw-code's CLI surface. Instead of requiring humans to notice when
+a new command skips --output-format, this test introspects the parser
+at runtime and verifies every command in the declared clawable-surface
+list supports --output-format {text,json}.
+
+When a new clawable-surface command is added:
+  1. Implement --output-format on the subparser (normal feature work).
+  2. Add the command name to CLAWABLE_SURFACES below.
+  3. This test passes automatically.
+
+When a developer adds a new clawable-surface command but forgets
+--output-format, the test fails with a concrete message pointing at
+the missing flag. Claws no longer need to eyeball parity; the contract
+is enforced at test time.
+
+Three classes of commands:
+  - CLAWABLE_SURFACES: MUST accept --output-format (inspect/lifecycle/exec/diagnostic)
+  - OPT_OUT_SURFACES: explicitly exempt (simulation/mode commands, human-first diagnostic)
+  - Any command in parser not listed in either: test FAILS with classification request
+
+This is operationalised parity — a machine-first CLI enforced by a
+machine-first test.
+"""
+
+from __future__ import annotations
+
+import subprocess
+import sys
+from pathlib import Path
+
+import pytest
+
+sys.path.insert(0, str(Path(__file__).resolve().parent.parent))
+
+from src.main import build_parser  # noqa: E402
+
+
+# Commands that MUST accept --output-format {text,json}.
+# These are the machine-first surfaces — session lifecycle, execution,
+# inspect, diagnostic inventory.
+CLAWABLE_SURFACES = frozenset({
+    # Session lifecycle (#160, #165, #166)
+    'list-sessions',
+    'delete-session',
+    'load-session',
+    'flush-transcript',
+    # Inspect (#167)
+    'show-command',
+    'show-tool',
+    # Execution/work-verb (#168)
+    'exec-command',
+    'exec-tool',
+    'route',
+    'bootstrap',
+    # Diagnostic inventory (#169, #170)
+    'command-graph',
+    'tool-pool',
+    'bootstrap-graph',
+    # Turn-loop with JSON output (#164 Stage B, #174)
+    'turn-loop',
+})
+
+# Commands explicitly exempt from --output-format requirement.
+# Rationale must be explicit — either the command is human-first
+# (rich Markdown docs/reports), simulation-only, or has a dedicated
+# JSON mode flag under a different name.
+OPT_OUT_SURFACES = frozenset({
+    # Rich-Markdown report commands (planned future: JSON schema)
+    'summary',            # full workspace summary (Markdown)
+    'manifest',           # workspace manifest (Markdown)
+    'parity-audit',       # TypeScript archive comparison (Markdown)
+    'setup-report',       # startup/prefetch report (Markdown)
+    # List commands with their own query/filter surface (not JSON yet)
+    'subsystems',         # use --limit
+    'commands',           # use --query / --limit / --no-plugin-commands
+    'tools',              # use --query / --limit / --simple-mode
+    # Simulation/debug surfaces (not claw-orchestrated)
+    'remote-mode',
+    'ssh-mode',
+    'teleport-mode',
+    'direct-connect-mode',
+    'deep-link-mode',
+})
+
+
+def _discover_subcommands_and_flags() -> dict[str, frozenset[str]]:
+    """Introspect the argparse tree to discover every subcommand and its flags.
+
+    Returns:
+      {subcommand_name: frozenset of option strings including --output-format
+       if registered}
+    """
+    parser = build_parser()
+    subcommand_flags: dict[str, frozenset[str]] = {}
+    for action in parser._actions:
+        if not hasattr(action, 'choices') or not action.choices:
+            continue
+        if action.dest != 'command':
+            continue
+        for name, subp in action.choices.items():
+            flags: set[str] = set()
+            for a in subp._actions:
+                if a.option_strings:
+                    flags.update(a.option_strings)
+            subcommand_flags[name] = frozenset(flags)
+    return subcommand_flags
+
+
+class TestClawableSurfaceParity:
+    """Every clawable-surface command MUST accept --output-format {text,json}.
+
+    This is the invariant that codifies 'claws can treat the CLI as a
+    unified protocol without special-casing'.
+    """
+
+    def test_all_clawable_surfaces_accept_output_format(self) -> None:
+        """All commands in CLAWABLE_SURFACES must have --output-format registered."""
+        subcommand_flags = _discover_subcommands_and_flags()
+        missing = []
+        for cmd in CLAWABLE_SURFACES:
+            if cmd not in subcommand_flags:
+                missing.append(f'{cmd}: not registered in parser')
+            elif '--output-format' not in subcommand_flags[cmd]:
+                missing.append(f'{cmd}: missing --output-format flag')
+        assert not missing, (
+            'Clawable-surface parity violation. Every command in '
+            'CLAWABLE_SURFACES must accept --output-format. Failures:\n'
+            + '\n'.join(f'  - {m}' for m in missing)
+        )
+
+    @pytest.mark.parametrize('cmd_name', sorted(CLAWABLE_SURFACES))
+    def test_clawable_surface_output_format_choices(self, cmd_name: str) -> None:
+        """Every clawable surface must accept exactly {text, json} choices."""
+        parser = build_parser()
+        for action in parser._actions:
+            if not hasattr(action, 'choices') or not action.choices:
+                continue
+            if action.dest != 'command':
+                continue
+            if cmd_name not in action.choices:
+                continue
+            subp = action.choices[cmd_name]
+            for a in subp._actions:
+                if '--output-format' in a.option_strings:
+                    assert a.choices == ['text', 'json'], (
+                        f'{cmd_name}: --output-format choices are {a.choices}, '
+                        f'expected [text, json]'
+                    )
+                    assert a.default == 'text', (
+                        f'{cmd_name}: --output-format default is {a.default!r}, '
+                        f'expected \'text\' for backward compat'
+                    )
+                    return
+        pytest.fail(f'{cmd_name}: no --output-format flag found')
+
+
+class TestCommandClassificationCoverage:
+    """Every registered subcommand must be classified as either CLAWABLE or OPT_OUT.
+
+    If a new command is added to the parser but forgotten in both sets, this
+    test fails loudly — forcing an explicit classification decision.
+    """
+
+    def test_every_registered_command_is_classified(self) -> None:
+        subcommand_flags = _discover_subcommands_and_flags()
+        all_classified = CLAWABLE_SURFACES | OPT_OUT_SURFACES
+        unclassified = set(subcommand_flags.keys()) - all_classified
+        assert not unclassified, (
+            'Unclassified subcommands detected. Every new command must be '
+            'explicitly added to either CLAWABLE_SURFACES (must accept '
+            '--output-format) or OPT_OUT_SURFACES (explicitly exempt with '
+            'rationale). Unclassified:\n'
+            + '\n'.join(f'  - {cmd}' for cmd in sorted(unclassified))
+        )
+
+    def test_no_command_in_both_sets(self) -> None:
+        """Sanity: a command cannot be both clawable AND opt-out."""
+        overlap = CLAWABLE_SURFACES & OPT_OUT_SURFACES
+        assert not overlap, (
+            f'Classification conflict: commands appear in both sets: {overlap}'
+        )
+
+    def test_all_classified_commands_actually_exist(self) -> None:
+        """No typos — every command in our sets must actually be registered."""
+        subcommand_flags = _discover_subcommands_and_flags()
+        ghosts = (CLAWABLE_SURFACES | OPT_OUT_SURFACES) - set(subcommand_flags.keys())
+        assert not ghosts, (
+            f'Phantom commands in classification sets (not in parser): {ghosts}. '
+            'Update CLAWABLE_SURFACES / OPT_OUT_SURFACES if commands were removed.'
+        )
+
+
+class TestJsonOutputContractEndToEnd:
+    """Verify the contract AT RUNTIME — not just parser-level, but actual execution.
+
+    Each clawable command must, when invoked with --output-format json,
+    produce parseable JSON on stdout (for success cases).
+    """
+
+    # Minimal invocation args for each clawable command (to hit success path)
+    RUNTIME_INVOCATIONS = {
+        'list-sessions': [],
+        # delete-session/load-session: skip (need state setup, covered by dedicated tests)
+        'show-command': ['add-dir'],
+        'show-tool': ['BashTool'],
+        'exec-command': ['add-dir', 'hi'],
+        'exec-tool': ['BashTool', '{}'],
+        'route': ['review'],
+        'bootstrap': ['hello'],
+        'command-graph': [],
+        'tool-pool': [],
+        'bootstrap-graph': [],
+        # flush-transcript: skip (creates files, covered by dedicated tests)
+    }
+
+    @pytest.mark.parametrize('cmd_name,cmd_args', sorted(RUNTIME_INVOCATIONS.items()))
+    def test_command_emits_parseable_json(self, cmd_name: str, cmd_args: list[str]) -> None:
+        """End-to-end: invoking with --output-format json yields valid JSON."""
+        import json
+        result = subprocess.run(
+            [sys.executable, '-m', 'src.main', cmd_name, *cmd_args, '--output-format', 'json'],
+            cwd=Path(__file__).resolve().parent.parent,
+            capture_output=True,
+            text=True,
+        )
+        # Accept exit 0 (success) or 1 (typed not-found) — both must still produce JSON
+        assert result.returncode in (0, 1), (
+            f'{cmd_name}: unexpected exit {result.returncode}\n'
+            f'stderr: {result.stderr}\n'
+            f'stdout: {result.stdout[:200]}'
+        )
+        try:
+            json.loads(result.stdout)
+        except json.JSONDecodeError as e:
+            pytest.fail(
+                f'{cmd_name} {cmd_args} --output-format json did not produce '
+                f'parseable JSON: {e}\nOutput: {result.stdout[:200]}'
+            )
+
+
+class TestOptOutSurfaceRejection:
+    """Cycle #30: OPT_OUT surfaces must REJECT --output-format, not silently accept.
+    
+    OPT_OUT_AUDIT.md classifies 12 surfaces as intentionally exempt from the
+    JSON envelope contract. This test LOCKS that rejection so accidental
+    drift (e.g., a developer adds --output-format to summary without thinking)
+    doesn't silently promote an OPT_OUT surface to CLAWABLE.
+    
+    Relationship to existing tests:
+    - test_clawable_surface_has_output_format: asserts CLAWABLE surfaces accept it
+    - TestOptOutSurfaceRejection: asserts OPT_OUT surfaces REJECT it
+    
+    Together, these two test classes form a complete parity check:
+    every surface is either IN or OUT, and both cases are explicitly tested.
+    
+    If an OPT_OUT surface is promoted to CLAWABLE intentionally:
+    1. Move it from OPT_OUT_SURFACES to CLAWABLE_SURFACES
+    2. Update OPT_OUT_AUDIT.md with promotion rationale
+    3. Remove from this test's expected rejections
+    4. Both sets of tests continue passing
+    """
+
+    @pytest.mark.parametrize('cmd_name', sorted(OPT_OUT_SURFACES))
+    def test_opt_out_surface_rejects_output_format(self, cmd_name: str) -> None:
+        """OPT_OUT surfaces must NOT accept --output-format flag.
+        
+        Passing --output-format to an OPT_OUT surface should produce an
+        'unrecognized arguments' error from argparse.
+        """
+        result = subprocess.run(
+            [sys.executable, '-m', 'src.main', cmd_name, '--output-format', 'json'],
+            cwd=Path(__file__).resolve().parent.parent,
+            capture_output=True,
+            text=True,
+        )
+        # Should fail — argparse exit 2 in text mode, exit 1 in JSON mode
+        # (both modes normalize to "unrecognized arguments" message)
+        assert result.returncode != 0, (
+            f'{cmd_name} unexpectedly accepted --output-format json. '
+            f'If this is intentional (promotion to CLAWABLE), move from '
+            f'OPT_OUT_SURFACES to CLAWABLE_SURFACES and update OPT_OUT_AUDIT.md. '
+            f'Output: {result.stdout[:200]}\nStderr: {result.stderr[:200]}'
+        )
+        # Verify the error is specifically about --output-format
+        error_text = result.stdout + result.stderr
+        assert '--output-format' in error_text or 'unrecognized' in error_text, (
+            f'{cmd_name} failed but error not about --output-format. '
+            f'Something else is broken:\n'
+            f'stdout: {result.stdout[:300]}\nstderr: {result.stderr[:300]}'
+        )
+
+    def test_opt_out_set_matches_audit_document(self) -> None:
+        """OPT_OUT_SURFACES constant must exactly match OPT_OUT_AUDIT.md listing.
+        
+        This test reads OPT_OUT_AUDIT.md and verifies the constant doesn't
+        drift from the documentation.
+        """
+        audit_path = Path(__file__).resolve().parent.parent / 'OPT_OUT_AUDIT.md'
+        audit_text = audit_path.read_text()
+        
+        # Expected 12 surfaces per audit doc
+        expected_surfaces = {
+            # Group A: Rich-Markdown Reports (4)
+            'summary', 'manifest', 'parity-audit', 'setup-report',
+            # Group B: List Commands (3)
+            'subsystems', 'commands', 'tools',
+            # Group C: Simulation/Debug (5)
+            'remote-mode', 'ssh-mode', 'teleport-mode',
+            'direct-connect-mode', 'deep-link-mode',
+        }
+        
+        assert OPT_OUT_SURFACES == expected_surfaces, (
+            f'OPT_OUT_SURFACES drift from expected 12 surfaces per audit:\n'
+            f'  Expected: {sorted(expected_surfaces)}\n'
+            f'  Actual:   {sorted(OPT_OUT_SURFACES)}'
+        )
+        
+        # Each surface should be mentioned in audit doc
+        missing_from_audit = [s for s in OPT_OUT_SURFACES if s not in audit_text]
+        assert not missing_from_audit, (
+            f'OPT_OUT surfaces not mentioned in OPT_OUT_AUDIT.md: {missing_from_audit}'
+        )
+
+    def test_opt_out_count_matches_declared(self) -> None:
+        """OPT_OUT_AUDIT.md declares '12 surfaces'. Constant must match."""
+        assert len(OPT_OUT_SURFACES) == 12, (
+            f'OPT_OUT_SURFACES has {len(OPT_OUT_SURFACES)} items, '
+            f'but OPT_OUT_AUDIT.md declares 12 total surfaces. '
+            f'Update either the audit doc or the constant.'
+        )

tests/test_command_graph_tool_pool_output_format.py

@@ -0,0 +1,70 @@
+"""Tests for --output-format on command-graph and tool-pool (ROADMAP #169).
+
+Diagnostic inventory surfaces now speak the CLI family's JSON contract.
+"""
+
+from __future__ import annotations
+
+import json
+import subprocess
+import sys
+from pathlib import Path
+
+sys.path.insert(0, str(Path(__file__).resolve().parent.parent))
+
+
+def _run(args: list[str]) -> subprocess.CompletedProcess:
+    return subprocess.run(
+        [sys.executable, '-m', 'src.main', *args],
+        cwd=Path(__file__).resolve().parent.parent,
+        capture_output=True,
+        text=True,
+    )
+
+
+class TestCommandGraphOutputFormat:
+    def test_command_graph_json(self) -> None:
+        result = _run(['command-graph', '--output-format', 'json'])
+        assert result.returncode == 0, result.stderr
+
+        envelope = json.loads(result.stdout)
+        assert 'builtins_count' in envelope
+        assert 'plugin_like_count' in envelope
+        assert 'skill_like_count' in envelope
+        assert 'total_count' in envelope
+        assert envelope['total_count'] == (
+            envelope['builtins_count'] + envelope['plugin_like_count'] + envelope['skill_like_count']
+        )
+        assert isinstance(envelope['builtins'], list)
+        if envelope['builtins']:
+            assert set(envelope['builtins'][0].keys()) == {'name', 'source_hint'}
+
+    def test_command_graph_text_backward_compat(self) -> None:
+        result = _run(['command-graph'])
+        assert result.returncode == 0
+        assert '# Command Graph' in result.stdout
+        assert 'Builtins:' in result.stdout
+        # Not JSON
+        assert not result.stdout.strip().startswith('{')
+
+
+class TestToolPoolOutputFormat:
+    def test_tool_pool_json(self) -> None:
+        result = _run(['tool-pool', '--output-format', 'json'])
+        assert result.returncode == 0, result.stderr
+
+        envelope = json.loads(result.stdout)
+        assert 'simple_mode' in envelope
+        assert 'include_mcp' in envelope
+        assert 'tool_count' in envelope
+        assert 'tools' in envelope
+        assert envelope['tool_count'] == len(envelope['tools'])
+        if envelope['tools']:
+            assert set(envelope['tools'][0].keys()) == {'name', 'source_hint'}
+
+    def test_tool_pool_text_backward_compat(self) -> None:
+        result = _run(['tool-pool'])
+        assert result.returncode == 0
+        assert '# Tool Pool' in result.stdout
+        assert 'Simple mode:' in result.stdout
+        assert not result.stdout.strip().startswith('{')

tests/test_cross_channel_consistency.py

@@ -0,0 +1,242 @@
+"""Cycle #27 cross-channel consistency audit (post-#181).
+
+After #181 fix (envelope.exit_code must match process exit), this test
+class systematizes the three-layer protocol invariant framework:
+
+1. Structural compliance: Does the envelope exist? (#178)
+2. Quality compliance: Is stderr silent + message truthful? (#179)
+3. Cross-channel consistency: Do multiple channels agree? (#181 + this)
+
+This file captures cycle #27's proactive invariant audit proving that
+envelope fields match their corresponding reality channels:
+
+- envelope.command ↔ argv dispatch
+- envelope.output_format ↔ --output-format flag
+- envelope.timestamp ↔ actual wall clock
+- envelope.found/handled/deleted ↔ operational truth (no error block mismatch)
+
+All tests passing = no drift detected.
+"""
+
+from __future__ import annotations
+
+import json
+import subprocess
+from datetime import datetime, timezone
+from pathlib import Path
+
+import pytest
+
+import sys
+sys.path.insert(0, str(Path(__file__).resolve().parent.parent))
+
+
+def _run(args: list[str]) -> subprocess.CompletedProcess:
+    """Run claw-code command and capture output."""
+    return subprocess.run(
+        ['python3', '-m', 'src.main'] + args,
+        cwd=Path(__file__).parent.parent,
+        capture_output=True,
+        text=True,
+    )
+
+
+class TestCrossChannelConsistency:
+    """Cycle #27: envelope fields must match reality channels.
+    
+    These are distinct from structural/quality tests. A command can
+    emit structurally valid JSON with clean stderr but still lie about
+    its own output_format or exit code (as #181 proved).
+    """
+
+    def test_envelope_command_matches_dispatch(self) -> None:
+        """Envelope.command must equal the dispatched subcommand."""
+        commands_to_test = [
+            'show-command',
+            'show-tool',
+            'list-sessions',
+            'exec-command',
+            'exec-tool',
+            'delete-session',
+        ]
+        failures = []
+        for cmd in commands_to_test:
+            # Dispatch varies by arity
+            if cmd == 'show-command':
+                args = [cmd, 'nonexistent', '--output-format', 'json']
+            elif cmd == 'show-tool':
+                args = [cmd, 'nonexistent', '--output-format', 'json']
+            elif cmd == 'exec-command':
+                args = [cmd, 'unknown', 'test', '--output-format', 'json']
+            elif cmd == 'exec-tool':
+                args = [cmd, 'unknown', '{}', '--output-format', 'json']
+            else:
+                args = [cmd, '--output-format', 'json']
+            
+            result = _run(args)
+            try:
+                envelope = json.loads(result.stdout)
+            except json.JSONDecodeError:
+                failures.append(f'{cmd}: JSON parse error')
+                continue
+            
+            if envelope.get('command') != cmd:
+                failures.append(
+                    f'{cmd}: envelope.command={envelope.get("command")}, '
+                    f'expected {cmd}'
+                )
+        assert not failures, (
+            'Envelope.command must match dispatched subcommand:\n' +
+            '\n'.join(failures)
+        )
+
+    def test_envelope_output_format_matches_flag(self) -> None:
+        """Envelope.output_format must match --output-format flag."""
+        result = _run(['list-sessions', '--output-format', 'json'])
+        envelope = json.loads(result.stdout)
+        assert envelope['output_format'] == 'json', (
+            f'output_format mismatch: flag=json, envelope={envelope["output_format"]}'
+        )
+
+    def test_envelope_timestamp_is_recent(self) -> None:
+        """Envelope.timestamp must be recent (generated at call time)."""
+        result = _run(['list-sessions', '--output-format', 'json'])
+        envelope = json.loads(result.stdout)
+        ts_str = envelope.get('timestamp')
+        assert ts_str, 'no timestamp field'
+        
+        ts = datetime.fromisoformat(ts_str.replace('Z', '+00:00'))
+        now = datetime.now(timezone.utc)
+        delta = abs((now - ts).total_seconds())
+        
+        assert delta < 5, f'timestamp off by {delta}s (should be <5s)'
+
+    def test_envelope_exit_code_matches_process_exit(self) -> None:
+        """Cycle #26/#181: envelope.exit_code == process exit code.
+        
+        This is a critical invariant. Claws that trust the envelope
+        field must get the truth, not a lie.
+        """
+        cases = [
+            (['show-command', 'nonexistent', '--output-format', 'json'], 1),
+            (['show-tool', 'nonexistent', '--output-format', 'json'], 1),
+            (['list-sessions', '--output-format', 'json'], 0),
+            (['delete-session', 'any-id', '--output-format', 'json'], 0),
+        ]
+        failures = []
+        for args, expected_exit in cases:
+            result = _run(args)
+            if result.returncode != expected_exit:
+                failures.append(
+                    f'{args[0]}: process exit {result.returncode}, '
+                    f'expected {expected_exit}'
+                )
+                continue
+            
+            envelope = json.loads(result.stdout)
+            if envelope['exit_code'] != result.returncode:
+                failures.append(
+                    f'{args[0]}: process exit {result.returncode}, '
+                    f'envelope.exit_code {envelope["exit_code"]}'
+                )
+        
+        assert not failures, (
+            'Envelope.exit_code must match process exit:\n' +
+            '\n'.join(failures)
+        )
+
+    def test_envelope_boolean_fields_match_error_presence(self) -> None:
+        """found/handled/deleted fields must correlate with error block.
+        
+        - If field is True, no error block should exist
+        - If field is False + operational error, error block must exist
+        - If field is False + idempotent (delete nonexistent), no error block
+        """
+        cases = [
+            # (args, bool_field, expected_value, expect_error_block)
+            (['show-command', 'nonexistent', '--output-format', 'json'],
+             'found', False, True),
+            (['exec-command', 'unknown', 'test', '--output-format', 'json'],
+             'handled', False, True),
+            (['delete-session', 'any-id', '--output-format', 'json'],
+             'deleted', False, False),  # idempotent, no error
+        ]
+        failures = []
+        for args, field, expected_val, expect_error in cases:
+            result = _run(args)
+            envelope = json.loads(result.stdout)
+            
+            actual_val = envelope.get(field)
+            has_error = 'error' in envelope
+            
+            if actual_val != expected_val:
+                failures.append(
+                    f'{args[0]}: {field}={actual_val}, expected {expected_val}'
+                )
+            if expect_error and not has_error:
+                failures.append(
+                    f'{args[0]}: expected error block, but none present'
+                )
+            elif not expect_error and has_error:
+                failures.append(
+                    f'{args[0]}: unexpected error block present'
+                )
+        
+        assert not failures, (
+            'Boolean fields must correlate with error block:\n' +
+            '\n'.join(failures)
+        )
+
+
+class TestTextVsJsonModeDivergence:
+    """Cycle #29: Document known text-mode vs JSON-mode exit code divergence.
+    
+    ERROR_HANDLING.md specifies the exit code contract applies ONLY when
+    --output-format json is set. Text mode follows argparse defaults (e.g.,
+    exit 2 for parse errors) while JSON mode normalizes to the contract
+    (exit 1 for parse errors).
+    
+    This test class LOCKS the expected divergence so:
+    1. Documentation stays aligned with implementation
+    2. Future changes to text mode behavior are caught as intentional
+    3. Claws consuming subprocess output can trust the docs
+    """
+
+    def test_unknown_command_text_mode_exits_2(self) -> None:
+        """Text mode: argparse default exit 2 for unknown subcommand."""
+        result = _run(['nonexistent-cmd'])
+        assert result.returncode == 2, (
+            f'text mode should exit 2 (argparse default), got {result.returncode}'
+        )
+
+    def test_unknown_command_json_mode_exits_1(self) -> None:
+        """JSON mode: normalized exit 1 for parse error (#178)."""
+        result = _run(['nonexistent-cmd', '--output-format', 'json'])
+        assert result.returncode == 1, (
+            f'JSON mode should exit 1 (protocol contract), got {result.returncode}'
+        )
+        envelope = json.loads(result.stdout)
+        assert envelope['error']['kind'] == 'parse'
+
+    def test_missing_required_arg_text_mode_exits_2(self) -> None:
+        """Text mode: argparse default exit 2 for missing required arg."""
+        result = _run(['exec-command'])  # missing name + prompt
+        assert result.returncode == 2, (
+            f'text mode should exit 2, got {result.returncode}'
+        )
+
+    def test_missing_required_arg_json_mode_exits_1(self) -> None:
+        """JSON mode: normalized exit 1 for parse error."""
+        result = _run(['exec-command', '--output-format', 'json'])
+        assert result.returncode == 1, (
+            f'JSON mode should exit 1, got {result.returncode}'
+        )
+
+    def test_success_path_identical_in_both_modes(self) -> None:
+        """Success exit codes are identical in both modes."""
+        text_result = _run(['list-sessions'])
+        json_result = _run(['list-sessions', '--output-format', 'json'])
+        assert text_result.returncode == json_result.returncode == 0, (
+            f'success exit should be 0 in both modes: '
+            f'text={text_result.returncode}, json={json_result.returncode}'
+        )

tests/test_exec_route_bootstrap_output_format.py

@@ -0,0 +1,306 @@
+"""Tests for --output-format on exec-command/exec-tool/route/bootstrap (ROADMAP #168).
+
+Closes the final JSON-parity gap across the CLI family. After #160/#165/
+#166/#167, the session-lifecycle and inspect CLI commands all spoke JSON;
+this batch extends that contract to the exec, route, and bootstrap
+surfaces — the commands claws actually invoke to DO work, not just inspect
+state.
+
+Verifies:
+- exec-command / exec-tool: JSON envelope with handled + source_hint on
+  success; {name, handled:false, error:{kind,message,retryable}} on
+  not-found
+- route: JSON envelope with match_count + matches list
+- bootstrap: JSON envelope with setup, routed_matches, turn, messages,
+  persisted_session_path
+- All 4 preserve legacy text mode byte-identically
+- Exit codes unchanged (0 success, 1 exec-not-found)
+"""
+
+from __future__ import annotations
+
+import json
+import subprocess
+import sys
+from pathlib import Path
+
+sys.path.insert(0, str(Path(__file__).resolve().parent.parent))
+
+
+def _run(args: list[str]) -> subprocess.CompletedProcess:
+    return subprocess.run(
+        [sys.executable, '-m', 'src.main', *args],
+        cwd=Path(__file__).resolve().parent.parent,
+        capture_output=True,
+        text=True,
+    )
+
+
+class TestExecCommandOutputFormat:
+    def test_exec_command_found_json(self) -> None:
+        result = _run(['exec-command', 'add-dir', 'hello', '--output-format', 'json'])
+        assert result.returncode == 0, result.stderr
+
+        envelope = json.loads(result.stdout)
+        assert envelope['handled'] is True
+        assert envelope['name'] == 'add-dir'
+        assert envelope['prompt'] == 'hello'
+        assert 'source_hint' in envelope
+        assert 'message' in envelope
+        assert 'error' not in envelope
+
+    def test_exec_command_not_found_json(self) -> None:
+        result = _run(['exec-command', 'nonexistent-cmd', 'hi', '--output-format', 'json'])
+        assert result.returncode == 1
+
+        envelope = json.loads(result.stdout)
+        assert envelope['handled'] is False
+        assert envelope['name'] == 'nonexistent-cmd'
+        assert envelope['prompt'] == 'hi'
+        assert envelope['error']['kind'] == 'command_not_found'
+        assert envelope['error']['retryable'] is False
+        assert 'source_hint' not in envelope
+
+    def test_exec_command_text_backward_compat(self) -> None:
+        result = _run(['exec-command', 'add-dir', 'hello'])
+        assert result.returncode == 0
+        # Single line prose (unchanged from pre-#168)
+        assert result.stdout.count('\n') == 1
+        assert 'add-dir' in result.stdout
+
+
+class TestExecToolOutputFormat:
+    def test_exec_tool_found_json(self) -> None:
+        result = _run(['exec-tool', 'BashTool', '{"cmd":"ls"}', '--output-format', 'json'])
+        assert result.returncode == 0, result.stderr
+
+        envelope = json.loads(result.stdout)
+        assert envelope['handled'] is True
+        assert envelope['name'] == 'BashTool'
+        assert envelope['payload'] == '{"cmd":"ls"}'
+        assert 'source_hint' in envelope
+        assert 'error' not in envelope
+
+    def test_exec_tool_not_found_json(self) -> None:
+        result = _run(['exec-tool', 'NotATool', '{}', '--output-format', 'json'])
+        assert result.returncode == 1
+
+        envelope = json.loads(result.stdout)
+        assert envelope['handled'] is False
+        assert envelope['name'] == 'NotATool'
+        assert envelope['error']['kind'] == 'tool_not_found'
+        assert envelope['error']['retryable'] is False
+
+    def test_exec_tool_text_backward_compat(self) -> None:
+        result = _run(['exec-tool', 'BashTool', '{}'])
+        assert result.returncode == 0
+        assert result.stdout.count('\n') == 1
+
+
+class TestRouteOutputFormat:
+    def test_route_json_envelope(self) -> None:
+        result = _run(['route', 'review mcp', '--limit', '3', '--output-format', 'json'])
+        assert result.returncode == 0
+
+        envelope = json.loads(result.stdout)
+        assert envelope['prompt'] == 'review mcp'
+        assert envelope['limit'] == 3
+        assert 'match_count' in envelope
+        assert 'matches' in envelope
+        assert envelope['match_count'] == len(envelope['matches'])
+        # Every match has required keys
+        for m in envelope['matches']:
+            assert set(m.keys()) == {'kind', 'name', 'score', 'source_hint'}
+            assert m['kind'] in ('command', 'tool')
+
+    def test_route_json_no_matches(self) -> None:
+        # Very unusual string should yield zero matches
+        result = _run(['route', 'zzzzzzzzzqqqqq', '--output-format', 'json'])
+        assert result.returncode == 0
+
+        envelope = json.loads(result.stdout)
+        assert envelope['match_count'] == 0
+        assert envelope['matches'] == []
+
+    def test_route_text_backward_compat(self) -> None:
+        """Text mode tab-separated output unchanged from pre-#168."""
+        result = _run(['route', 'review mcp', '--limit', '2'])
+        assert result.returncode == 0
+        # Each non-empty line has exactly 3 tabs (kind\tname\tscore\tsource_hint)
+        for line in result.stdout.strip().split('\n'):
+            if line:
+                assert line.count('\t') == 3
+
+
+class TestBootstrapOutputFormat:
+    def test_bootstrap_json_envelope(self) -> None:
+        result = _run(['bootstrap', 'review MCP', '--limit', '2', '--output-format', 'json'])
+        assert result.returncode == 0, result.stderr
+
+        envelope = json.loads(result.stdout)
+        # Required top-level keys
+        required = {
+            'prompt', 'limit', 'setup', 'routed_matches',
+            'command_execution_messages', 'tool_execution_messages',
+            'turn', 'persisted_session_path',
+        }
+        assert required.issubset(envelope.keys())
+        # Setup sub-envelope
+        assert 'python_version' in envelope['setup']
+        assert 'platform_name' in envelope['setup']
+        # Turn sub-envelope
+        assert 'stop_reason' in envelope['turn']
+        assert 'prompt' in envelope['turn']
+
+    def test_bootstrap_text_is_markdown(self) -> None:
+        """Text mode produces Markdown (unchanged from pre-#168)."""
+        result = _run(['bootstrap', 'hello', '--limit', '2'])
+        assert result.returncode == 0
+        # Markdown headers
+        assert '# Runtime Session' in result.stdout
+        assert '## Setup' in result.stdout
+        assert '## Routed Matches' in result.stdout
+
+
+class TestFamilyWideJsonParity:
+    """After #167 and #168, ALL inspect/exec/route/lifecycle commands
+    support --output-format. Verify the full family is now parity-complete."""
+
+    FAMILY_SURFACES = [
+        # (cmd_args, expected_to_parse_json)
+        (['show-command', 'add-dir'], True),
+        (['show-tool', 'BashTool'], True),
+        (['exec-command', 'add-dir', 'hi'], True),
+        (['exec-tool', 'BashTool', '{}'], True),
+        (['route', 'review'], True),
+        (['bootstrap', 'hello'], True),
+    ]
+
+    def test_all_family_commands_accept_output_format_json(self) -> None:
+        """Every family command accepts --output-format json and emits parseable JSON."""
+        failures = []
+        for args_base, should_parse in self.FAMILY_SURFACES:
+            result = _run([*args_base, '--output-format', 'json'])
+            if result.returncode not in (0, 1):
+                failures.append(f'{args_base}: exit {result.returncode} — {result.stderr}')
+                continue
+            try:
+                json.loads(result.stdout)
+            except json.JSONDecodeError as e:
+                failures.append(f'{args_base}: not parseable JSON ({e}): {result.stdout[:100]}')
+        assert not failures, (
+            'CLI family JSON parity gap:\n' + '\n'.join(failures)
+        )
+
+    def test_all_family_commands_text_mode_unchanged(self) -> None:
+        """Omitting --output-format defaults to text for every family command."""
+        # Sanity: just verify each runs without error in text mode
+        for args_base, _ in self.FAMILY_SURFACES:
+            result = _run(args_base)
+            assert result.returncode in (0, 1), (
+                f'{args_base} failed in text mode: {result.stderr}'
+            )
+            # Output should not be JSON-shaped (no leading {)
+            assert not result.stdout.strip().startswith('{')
+
+
+class TestEnvelopeExitCodeMatchesProcessExit:
+    """#181: Envelope exit_code field must match actual process exit code.
+    
+    Regression test for the protocol violation where exec-command/exec-tool
+    not-found cases returned exit code 1 from the process but emitted
+    envelopes with exit_code: 0 (default wrap_json_envelope). Claws reading
+    the envelope would misclassify failures as successes.
+    
+    Contract (from ERROR_HANDLING.md):
+    - Exit code 0 = success
+    - Exit code 1 = error/not-found
+    - Envelope MUST reflect process exit
+    """
+
+    def test_exec_command_not_found_envelope_exit_matches(self) -> None:
+        """exec-command 'unknown-name' must have exit_code=1 in envelope."""
+        result = _run(['exec-command', 'nonexistent-cmd-name', 'test-prompt', '--output-format', 'json'])
+        assert result.returncode == 1, f'process exit should be 1, got {result.returncode}'
+        envelope = json.loads(result.stdout)
+        assert envelope['exit_code'] == 1, (
+            f'envelope.exit_code mismatch: process=1, envelope={envelope["exit_code"]}'
+        )
+        assert envelope['handled'] is False
+        assert envelope['error']['kind'] == 'command_not_found'
+
+    def test_exec_tool_not_found_envelope_exit_matches(self) -> None:
+        """exec-tool 'unknown-tool' must have exit_code=1 in envelope."""
+        result = _run(['exec-tool', 'nonexistent-tool-name', '{}', '--output-format', 'json'])
+        assert result.returncode == 1, f'process exit should be 1, got {result.returncode}'
+        envelope = json.loads(result.stdout)
+        assert envelope['exit_code'] == 1, (
+            f'envelope.exit_code mismatch: process=1, envelope={envelope["exit_code"]}'
+        )
+        assert envelope['handled'] is False
+        assert envelope['error']['kind'] == 'tool_not_found'
+
+    def test_all_commands_exit_code_invariant(self) -> None:
+        """Audit: for every clawable command, envelope.exit_code == process exit.
+        
+        This is a stronger invariant than 'emits JSON'. Claws dispatching on
+        the envelope's exit_code field must get the truth, not a lie.
+        """
+        # Sample cases known to return non-zero
+        cases = [
+            # command, expected_exit, justification
+            (['show-command', 'nonexistent-abc'], 1, 'not-found inventory lookup'),
+            (['show-tool', 'nonexistent-xyz'], 1, 'not-found inventory lookup'),
+            (['exec-command', 'nonexistent-1', 'test'], 1, 'not-found execution'),
+            (['exec-tool', 'nonexistent-2', '{}'], 1, 'not-found execution'),
+        ]
+        mismatches = []
+        for args, expected_exit, reason in cases:
+            result = _run([*args, '--output-format', 'json'])
+            if result.returncode != expected_exit:
+                mismatches.append(
+                    f'{args}: expected process exit {expected_exit} ({reason}), '
+                    f'got {result.returncode}'
+                )
+                continue
+            try:
+                envelope = json.loads(result.stdout)
+            except json.JSONDecodeError as e:
+                mismatches.append(f'{args}: JSON parse failed: {e}')
+                continue
+            if envelope.get('exit_code') != result.returncode:
+                mismatches.append(
+                    f'{args}: envelope.exit_code={envelope.get("exit_code")} '
+                    f'!= process exit={result.returncode} ({reason})'
+                )
+        assert not mismatches, (
+            'Envelope exit_code must match process exit code:\n' + 
+            '\n'.join(mismatches)
+        )
+
+
+class TestMetadataFlags:
+    """Cycle #28: --version flag implementation (#180 gap closure)."""
+
+    def test_version_flag_returns_version_text(self) -> None:
+        """--version returns version string and exits successfully."""
+        result = _run(['--version'])
+        assert result.returncode == 0
+        assert 'claw-code' in result.stdout
+        assert '1.0.0' in result.stdout
+
+    def test_help_flag_returns_help_text(self) -> None:
+        """--help returns help text and exits successfully."""
+        result = _run(['--help'])
+        assert result.returncode == 0
+        assert 'usage:' in result.stdout
+        assert 'Python porting workspace' in result.stdout
+
+    def test_help_still_works_after_version_added(self) -> None:
+        """Verify -h and --help both work (no regression)."""
+        result_short = _run(['-h'])
+        result_long = _run(['--help'])
+        assert result_short.returncode == 0
+        assert result_long.returncode == 0
+        assert 'usage:' in result_short.stdout
+        assert 'usage:' in result_long.stdout

tests/test_flush_transcript_cli.py

@@ -0,0 +1,206 @@
+"""Tests for flush-transcript CLI parity with the #160/#165 lifecycle triplet (ROADMAP #166).
+
+Verifies that session *creation* now accepts the same flag family as session
+management (list/delete/load):
+- --directory DIR (alternate storage location)
+- --output-format {text,json} (structured output)
+- --session-id ID (deterministic IDs for claw checkpointing)
+
+Also verifies backward compat: default text output unchanged byte-for-byte.
+"""
+
+from __future__ import annotations
+
+import json
+import subprocess
+import sys
+from pathlib import Path
+
+import pytest
+
+sys.path.insert(0, str(Path(__file__).resolve().parent.parent))
+
+
+_REPO_ROOT = Path(__file__).resolve().parent.parent
+
+
+def _run_cli(*args: str) -> subprocess.CompletedProcess[str]:
+    return subprocess.run(
+        [sys.executable, '-m', 'src.main', *args],
+        capture_output=True, text=True, cwd=str(_REPO_ROOT),
+    )
+
+
+class TestDirectoryFlag:
+    def test_flush_transcript_writes_to_custom_directory(self, tmp_path: Path) -> None:
+        result = _run_cli(
+            'flush-transcript', 'hello world',
+            '--directory', str(tmp_path),
+        )
+        assert result.returncode == 0, result.stderr
+        # Exactly one session file should exist in the directory
+        files = list(tmp_path.glob('*.json'))
+        assert len(files) == 1
+        # And the legacy text output points to that file
+        assert str(files[0]) in result.stdout
+
+
+class TestSessionIdFlag:
+    def test_explicit_session_id_is_respected(self, tmp_path: Path) -> None:
+        result = _run_cli(
+            'flush-transcript', 'hello',
+            '--directory', str(tmp_path),
+            '--session-id', 'deterministic-id-42',
+        )
+        assert result.returncode == 0, result.stderr
+        expected_path = tmp_path / 'deterministic-id-42.json'
+        assert expected_path.exists(), (
+            f'session file not created at deterministic path: {expected_path}'
+        )
+        # And it should contain the ID we asked for
+        data = json.loads(expected_path.read_text())
+        assert data['session_id'] == 'deterministic-id-42'
+
+    def test_auto_session_id_when_flag_omitted(self, tmp_path: Path) -> None:
+        """Without --session-id, engine still auto-generates a UUID (backward compat)."""
+        result = _run_cli(
+            'flush-transcript', 'hello',
+            '--directory', str(tmp_path),
+        )
+        assert result.returncode == 0
+        files = list(tmp_path.glob('*.json'))
+        assert len(files) == 1
+        # The filename (minus .json) should be a 32-char hex UUID
+        stem = files[0].stem
+        assert len(stem) == 32
+        assert all(c in '0123456789abcdef' for c in stem)
+
+
+class TestOutputFormatFlag:
+    def test_json_mode_emits_structured_envelope(self, tmp_path: Path) -> None:
+        result = _run_cli(
+            'flush-transcript', 'hello',
+            '--directory', str(tmp_path),
+            '--session-id', 'beta',
+            '--output-format', 'json',
+        )
+        assert result.returncode == 0
+        data = json.loads(result.stdout)
+        assert data['session_id'] == 'beta'
+        assert data['flushed'] is True
+        assert data['path'].endswith('beta.json')
+        # messages_count and token counts should be present and typed
+        assert isinstance(data['messages_count'], int)
+        assert isinstance(data['input_tokens'], int)
+        assert isinstance(data['output_tokens'], int)
+
+    def test_text_mode_byte_identical_to_pre_166_output(self, tmp_path: Path) -> None:
+        """Legacy text output must not change — claws may be parsing it."""
+        result = _run_cli(
+            'flush-transcript', 'hello',
+            '--directory', str(tmp_path),
+        )
+        assert result.returncode == 0
+        lines = result.stdout.strip().split('\n')
+        # Line 1: path ending in .json
+        assert lines[0].endswith('.json')
+        # Line 2: exact legacy format
+        assert lines[1] == 'flushed=True'
+
+
+class TestBackwardCompat:
+    def test_no_flags_default_behaviour(self, tmp_path: Path, monkeypatch: pytest.MonkeyPatch) -> None:
+        """Running with no flags still works (default dir, text mode, auto UUID)."""
+        import os
+        env = os.environ.copy()
+        env['PYTHONPATH'] = str(_REPO_ROOT)
+        result = subprocess.run(
+            [sys.executable, '-m', 'src.main', 'flush-transcript', 'hello'],
+            capture_output=True, text=True, cwd=str(tmp_path), env=env,
+        )
+        assert result.returncode == 0, result.stderr
+        # Default dir is `.port_sessions` in CWD
+        sessions_dir = tmp_path / '.port_sessions'
+        assert sessions_dir.exists()
+        assert len(list(sessions_dir.glob('*.json'))) == 1
+
+
+class TestLifecycleIntegration:
+    """#166's real value: the triplet + creation command are now a coherent family."""
+
+    def test_create_then_list_then_load_then_delete_roundtrip(
+        self, tmp_path: Path,
+    ) -> None:
+        """End-to-end: flush → list → load → delete, all via the same --directory."""
+        # 1. Create
+        create_result = _run_cli(
+            'flush-transcript', 'roundtrip test',
+            '--directory', str(tmp_path),
+            '--session-id', 'rt-session',
+            '--output-format', 'json',
+        )
+        assert create_result.returncode == 0
+        assert json.loads(create_result.stdout)['session_id'] == 'rt-session'
+
+        # 2. List
+        list_result = _run_cli(
+            'list-sessions',
+            '--directory', str(tmp_path),
+            '--output-format', 'json',
+        )
+        assert list_result.returncode == 0
+        list_data = json.loads(list_result.stdout)
+        assert 'rt-session' in list_data['sessions']
+
+        # 3. Load
+        load_result = _run_cli(
+            'load-session', 'rt-session',
+            '--directory', str(tmp_path),
+            '--output-format', 'json',
+        )
+        assert load_result.returncode == 0
+        assert json.loads(load_result.stdout)['loaded'] is True
+
+        # 4. Delete
+        delete_result = _run_cli(
+            'delete-session', 'rt-session',
+            '--directory', str(tmp_path),
+            '--output-format', 'json',
+        )
+        assert delete_result.returncode == 0
+
+        # 5. Verify gone
+        verify_result = _run_cli(
+            'load-session', 'rt-session',
+            '--directory', str(tmp_path),
+            '--output-format', 'json',
+        )
+        assert verify_result.returncode == 1
+        assert json.loads(verify_result.stdout)['error']['kind'] == 'session_not_found'
+
+
+class TestFullFamilyParity:
+    """All four session-lifecycle CLI commands accept the same core flag pair.
+
+    This is the #166 acceptance test: flush-transcript joins the family.
+    """
+
+    @pytest.mark.parametrize(
+        'command',
+        ['list-sessions', 'delete-session', 'load-session', 'flush-transcript'],
+    )
+    def test_all_four_accept_directory_flag(self, command: str) -> None:
+        help_text = _run_cli(command, '--help').stdout
+        assert '--directory' in help_text, (
+            f'{command} missing --directory flag (#166 parity gap)'
+        )
+
+    @pytest.mark.parametrize(
+        'command',
+        ['list-sessions', 'delete-session', 'load-session', 'flush-transcript'],
+    )
+    def test_all_four_accept_output_format_flag(self, command: str) -> None:
+        help_text = _run_cli(command, '--help').stdout
+        assert '--output-format' in help_text, (
+            f'{command} missing --output-format flag (#166 parity gap)'
+        )

tests/test_json_envelope_field_consistency.py

@@ -0,0 +1,213 @@
+"""JSON envelope field consistency validation (ROADMAP #173 prep).
+
+This test suite validates that clawable-surface commands' JSON output
+follows the contract defined in SCHEMAS.md. Currently, commands emit
+command-specific envelopes without the canonical common fields
+(timestamp, command, exit_code, output_format, schema_version).
+
+This test documents the current gap and validates the consistency
+of what IS there, providing a baseline for #173 (common field wrapping).
+
+Phase 1 (this test): Validate consistency within each command's envelope.
+Phase 2 (future #173): Wrap all 13 commands with canonical common fields.
+"""
+
+from __future__ import annotations
+
+import json
+import subprocess
+import sys
+from pathlib import Path
+from typing import Any
+
+import pytest
+
+sys.path.insert(0, str(Path(__file__).resolve().parent.parent))
+
+from src.main import build_parser  # noqa: E402
+
+
+# Expected fields for each clawable command's JSON envelope.
+# These are the command-specific fields (not including common fields yet).
+# Entries are (command_name, required_fields, optional_fields).
+ENVELOPE_CONTRACTS = {
+    'list-sessions': (
+        {'count', 'sessions'},
+        set(),
+    ),
+    'delete-session': (
+        {'session_id', 'deleted', 'directory'},
+        set(),
+    ),
+    'load-session': (
+        {'session_id', 'loaded', 'directory', 'path'},
+        set(),
+    ),
+    'flush-transcript': (
+        {'session_id', 'path', 'flushed', 'messages_count', 'input_tokens', 'output_tokens'},
+        set(),
+    ),
+    'show-command': (
+        {'name', 'found', 'source_hint', 'responsibility'},
+        set(),
+    ),
+    'show-tool': (
+        {'name', 'found', 'source_hint'},
+        set(),
+    ),
+    'exec-command': (
+        {'name', 'prompt', 'handled', 'message', 'source_hint'},
+        set(),
+    ),
+    'exec-tool': (
+        {'name', 'payload', 'handled', 'message', 'source_hint'},
+        set(),
+    ),
+    'route': (
+        {'prompt', 'limit', 'match_count', 'matches'},
+        set(),
+    ),
+    'bootstrap': (
+        {'prompt', 'setup', 'routed_matches', 'turn', 'persisted_session_path'},
+        set(),
+    ),
+    'command-graph': (
+        {'builtins_count', 'plugin_like_count', 'skill_like_count', 'total_count', 'builtins', 'plugin_like', 'skill_like'},
+        set(),
+    ),
+    'tool-pool': (
+        {'simple_mode', 'include_mcp', 'tool_count', 'tools'},
+        set(),
+    ),
+    'bootstrap-graph': (
+        {'stages', 'note'},
+        set(),
+    ),
+}
+
+
+class TestJsonEnvelopeConsistency:
+    """Validate current command envelopes match their declared contracts.
+
+    This is a consistency check, not a conformance check. Once #173 adds
+    common fields to all commands, these tests will auto-pass the common
+    field assertions and verify command-specific fields stay consistent.
+    """
+
+    @pytest.mark.parametrize('cmd_name,contract', sorted(ENVELOPE_CONTRACTS.items()))
+    def test_command_json_fields_present(self, cmd_name: str, contract: tuple[set[str], set[str]]) -> None:
+        required, optional = contract
+        """Command's JSON envelope must include all required fields."""
+        # Get minimal invocation args for this command
+        test_invocations = {
+            'list-sessions': [],
+            'show-command': ['add-dir'],
+            'show-tool': ['BashTool'],
+            'exec-command': ['add-dir', 'hi'],
+            'exec-tool': ['BashTool', '{}'],
+            'route': ['review'],
+            'bootstrap': ['hello'],
+            'command-graph': [],
+            'tool-pool': [],
+            'bootstrap-graph': [],
+        }
+        
+        if cmd_name not in test_invocations:
+            pytest.skip(f'{cmd_name} requires session setup; skipped')
+        
+        cmd_args = test_invocations[cmd_name]
+        result = subprocess.run(
+            [sys.executable, '-m', 'src.main', cmd_name, *cmd_args, '--output-format', 'json'],
+            cwd=Path(__file__).resolve().parent.parent,
+            capture_output=True,
+            text=True,
+        )
+        
+        if result.returncode not in (0, 1):
+            pytest.fail(f'{cmd_name}: unexpected exit {result.returncode}\nstderr: {result.stderr}')
+        
+        try:
+            envelope = json.loads(result.stdout)
+        except json.JSONDecodeError as e:
+            pytest.fail(f'{cmd_name}: invalid JSON: {e}\nOutput: {result.stdout[:200]}')
+        
+        # Check required fields (command-specific)
+        missing = required - set(envelope.keys())
+        if missing:
+            pytest.fail(
+                f'{cmd_name} envelope missing required fields: {missing}\n'
+                f'Expected: {required}\nGot: {set(envelope.keys())}'
+            )
+        
+        # Check that extra fields are accounted for (warn if unknown)
+        known = required | optional
+        extra = set(envelope.keys()) - known
+        if extra:
+            # Warn but don't fail — there may be new fields added
+            pytest.warns(UserWarning, match=f'extra fields in {cmd_name}: {extra}')
+
+    def test_envelope_field_value_types(self) -> None:
+        """Smoke test: envelope fields have expected types (bool, int, str, list, dict, null)."""
+        result = subprocess.run(
+            [sys.executable, '-m', 'src.main', 'list-sessions', '--output-format', 'json'],
+            cwd=Path(__file__).resolve().parent.parent,
+            capture_output=True,
+            text=True,
+        )
+        
+        envelope = json.loads(result.stdout)
+        
+        # Spot check a few fields
+        assert isinstance(envelope.get('count'), int), 'count should be int'
+        assert isinstance(envelope.get('sessions'), list), 'sessions should be list'
+
+
+class TestJsonEnvelopeCommonFieldPrep:
+    """Validation stubs for common fields (part of #173 implementation).
+
+    These tests will activate once wrap_json_envelope() is applied to all
+    13 clawable commands. Currently they document the expected contract.
+    """
+
+    def test_all_envelopes_include_timestamp(self) -> None:
+        """Every clawable envelope must include ISO 8601 UTC timestamp."""
+        result = subprocess.run(
+            [sys.executable, '-m', 'src.main', 'command-graph', '--output-format', 'json'],
+            cwd=Path(__file__).resolve().parent.parent,
+            capture_output=True,
+            text=True,
+        )
+        envelope = json.loads(result.stdout)
+        assert 'timestamp' in envelope, 'Missing timestamp field'
+        # Verify ISO 8601 format (ends with Z for UTC)
+        assert envelope['timestamp'].endswith('Z'), f'Timestamp not UTC: {envelope["timestamp"]}'
+
+    def test_all_envelopes_include_command(self) -> None:
+        """Every envelope must echo the command name."""
+        test_cases = [
+            ('list-sessions', []),
+            ('command-graph', []),
+            ('bootstrap', ['hello']),
+        ]
+        for cmd_name, cmd_args in test_cases:
+            result = subprocess.run(
+                [sys.executable, '-m', 'src.main', cmd_name, *cmd_args, '--output-format', 'json'],
+                cwd=Path(__file__).resolve().parent.parent,
+                capture_output=True,
+                text=True,
+            )
+            envelope = json.loads(result.stdout)
+            assert envelope.get('command') == cmd_name, f'{cmd_name} envelope.command mismatch'
+
+    def test_all_envelopes_include_exit_code_and_schema_version(self) -> None:
+        """Every envelope must include exit_code and schema_version."""
+        result = subprocess.run(
+            [sys.executable, '-m', 'src.main', 'tool-pool', '--output-format', 'json'],
+            cwd=Path(__file__).resolve().parent.parent,
+            capture_output=True,
+            text=True,
+        )
+        envelope = json.loads(result.stdout)
+        assert 'exit_code' in envelope, 'Missing exit_code'
+        assert 'schema_version' in envelope, 'Missing schema_version'
+        assert envelope['schema_version'] == '1.0', 'Wrong schema_version'

tests/test_load_session_cli.py

@@ -0,0 +1,183 @@
+"""Tests for load-session CLI parity with list-sessions/delete-session (ROADMAP #165).
+
+Verifies the session-lifecycle CLI triplet is now symmetric:
+- --directory DIR accepted (alternate storage locations reachable)
+- --output-format {text,json} accepted
+- Not-found emits typed JSON error envelope, never a Python traceback
+- Corrupted session file distinguished from not-found via 'kind'
+- Legacy text-mode output unchanged (backward compat)
+"""
+
+from __future__ import annotations
+
+import json
+import subprocess
+import sys
+from pathlib import Path
+
+import pytest
+
+sys.path.insert(0, str(Path(__file__).resolve().parent.parent))
+
+from src.session_store import StoredSession, save_session  # noqa: E402
+
+
+_REPO_ROOT = Path(__file__).resolve().parent.parent
+
+
+def _run_cli(
+    *args: str, cwd: Path | None = None,
+) -> subprocess.CompletedProcess[str]:
+    """Always invoke the CLI with cwd=repo-root so ``python -m src.main``
+    can resolve the ``src`` package, regardless of where the test's
+    tmp_path is.
+    """
+    return subprocess.run(
+        [sys.executable, '-m', 'src.main', *args],
+        capture_output=True,
+        text=True,
+        cwd=str(cwd) if cwd else str(_REPO_ROOT),
+    )
+
+
+def _make_session(session_id: str) -> StoredSession:
+    return StoredSession(
+        session_id=session_id, messages=('hi',), input_tokens=1, output_tokens=2,
+    )
+
+
+class TestDirectoryFlagParity:
+    def test_load_session_accepts_directory_flag(self, tmp_path: Path) -> None:
+        save_session(_make_session('alpha'), tmp_path)
+        result = _run_cli('load-session', 'alpha', '--directory', str(tmp_path))
+        assert result.returncode == 0, result.stderr
+        assert 'alpha' in result.stdout
+
+    def test_load_session_without_directory_uses_cwd_default(
+        self, tmp_path: Path,
+    ) -> None:
+        """When --directory is omitted, fall back to .port_sessions in CWD.
+
+        Subprocess CWD must still be able to import ``src.main``, so we use
+        ``cwd=tmp_path`` which means ``python -m src.main`` needs ``src/`` on
+        sys.path. We set PYTHONPATH to the repo root via env.
+        """
+        sessions_dir = tmp_path / '.port_sessions'
+        sessions_dir.mkdir()
+        save_session(_make_session('beta'), sessions_dir)
+        import os
+        env = os.environ.copy()
+        env['PYTHONPATH'] = str(_REPO_ROOT)
+        result = subprocess.run(
+            [sys.executable, '-m', 'src.main', 'load-session', 'beta'],
+            capture_output=True, text=True, cwd=str(tmp_path), env=env,
+        )
+        assert result.returncode == 0, result.stderr
+        assert 'beta' in result.stdout
+
+
+class TestOutputFormatFlagParity:
+    def test_json_mode_on_success(self, tmp_path: Path) -> None:
+        save_session(
+            StoredSession(
+                session_id='gamma', messages=('x', 'y'),
+                input_tokens=5, output_tokens=7,
+            ),
+            tmp_path,
+        )
+        result = _run_cli(
+            'load-session', 'gamma',
+            '--directory', str(tmp_path),
+            '--output-format', 'json',
+        )
+        assert result.returncode == 0
+        data = json.loads(result.stdout)
+        # Verify common envelope fields (SCHEMAS.md contract)
+        assert 'timestamp' in data
+        assert data['command'] == 'load-session'
+        assert data['exit_code'] == 0
+        assert data['schema_version'] == '1.0'
+        # Verify command-specific fields
+        assert data['session_id'] == 'gamma'
+        assert data['loaded'] is True
+        assert data['messages_count'] == 2
+        assert data['input_tokens'] == 5
+        assert data['output_tokens'] == 7
+
+    def test_text_mode_unchanged_on_success(self, tmp_path: Path) -> None:
+        """Legacy text output must be byte-identical for backward compat."""
+        save_session(_make_session('delta'), tmp_path)
+        result = _run_cli('load-session', 'delta', '--directory', str(tmp_path))
+        assert result.returncode == 0
+        lines = result.stdout.strip().split('\n')
+        assert lines == ['delta', '1 messages', 'in=1 out=2']
+
+
+class TestNotFoundTypedError:
+    def test_not_found_json_envelope(self, tmp_path: Path) -> None:
+        """Not-found emits structured JSON, never a Python traceback."""
+        result = _run_cli(
+            'load-session', 'missing',
+            '--directory', str(tmp_path),
+            '--output-format', 'json',
+        )
+        assert result.returncode == 1
+        assert 'Traceback' not in result.stderr, (
+            'regression #165: raw traceback leaked to stderr'
+        )
+        assert 'SessionNotFoundError' not in result.stdout, (
+            'regression #165: internal class name leaked into CLI output'
+        )
+        data = json.loads(result.stdout)
+        assert data['session_id'] == 'missing'
+        assert data['loaded'] is False
+        assert data['error']['kind'] == 'session_not_found'
+        assert data['error']['retryable'] is False
+        # directory field is populated so claws know where we looked
+        assert 'directory' in data['error']
+
+    def test_not_found_text_mode_no_traceback(self, tmp_path: Path) -> None:
+        """Text mode on not-found must not dump a Python stack either."""
+        result = _run_cli(
+            'load-session', 'missing', '--directory', str(tmp_path),
+        )
+        assert result.returncode == 1
+        assert 'Traceback' not in result.stderr
+        assert result.stdout.startswith('error:')
+
+
+class TestLoadFailedDistinctFromNotFound:
+    def test_corrupted_session_file_surfaces_distinct_kind(
+        self, tmp_path: Path,
+    ) -> None:
+        """A corrupted JSON file must emit kind='session_load_failed', not 'session_not_found'."""
+        (tmp_path / 'broken.json').write_text('{ not valid json')
+        result = _run_cli(
+            'load-session', 'broken',
+            '--directory', str(tmp_path),
+            '--output-format', 'json',
+        )
+        assert result.returncode == 1
+        data = json.loads(result.stdout)
+        assert data['error']['kind'] == 'session_load_failed'
+        assert data['error']['retryable'] is True, (
+            'corrupted file is potentially retryable (fs glitch) unlike not-found'
+        )
+
+
+class TestTripletParityConsistency:
+    """All three #160 CLI commands should accept the same flag pair."""
+
+    @pytest.mark.parametrize('command', ['list-sessions', 'delete-session', 'load-session'])
+    def test_all_three_accept_directory_flag(self, command: str) -> None:
+        help_text = _run_cli(command, '--help').stdout
+        assert '--directory' in help_text, (
+            f'{command} missing --directory flag (#165 parity gap)'
+        )
+
+    @pytest.mark.parametrize('command', ['list-sessions', 'delete-session', 'load-session'])
+    def test_all_three_accept_output_format_flag(self, command: str) -> None:
+        help_text = _run_cli(command, '--help').stdout
+        assert '--output-format' in help_text, (
+            f'{command} missing --output-format flag (#165 parity gap)'
+        )

tests/test_parse_error_envelope.py

@@ -0,0 +1,239 @@
+"""#178 — argparse-level errors emit JSON envelope when --output-format json is requested.
+
+Before #178:
+  $ claw nonexistent --output-format json
+  usage: main.py [-h] {summary,manifest,...} ...
+  main.py: error: argument command: invalid choice: 'nonexistent' (choose from ...)
+  [exit 2, argparse dumps help to stderr, no JSON envelope]
+
+After #178:
+  $ claw nonexistent --output-format json
+  {"timestamp": "...", "command": "nonexistent", "exit_code": 1, ...,
+   "error": {"kind": "parse", "operation": "argparse", ...}}
+  [exit 1, JSON envelope on stdout, matches SCHEMAS.md contract]
+
+Contract:
+- text mode: unchanged (argparse still dumps help to stderr, exit code 2)
+- JSON mode: envelope matches SCHEMAS.md 'error' shape, exit code 1
+- Parse errors use error.kind='parse' (distinct from runtime/session/etc.)
+"""
+
+from __future__ import annotations
+
+import json
+import subprocess
+import sys
+from pathlib import Path
+
+import pytest
+
+CLI = [sys.executable, '-m', 'src.main']
+REPO_ROOT = Path(__file__).resolve().parent.parent
+
+
+class TestParseErrorJsonEnvelope:
+    """Argparse errors emit JSON envelope when --output-format json is requested."""
+
+    def test_unknown_command_json_mode_emits_envelope(self) -> None:
+        """Unknown command + --output-format json → parse-error envelope."""
+        result = subprocess.run(
+            CLI + ['nonexistent-command', '--output-format', 'json'],
+            cwd=REPO_ROOT,
+            capture_output=True,
+            text=True,
+        )
+        assert result.returncode == 1, f"expected exit 1; got {result.returncode}"
+        envelope = json.loads(result.stdout)
+        # Common fields
+        assert envelope['schema_version'] == '1.0'
+        assert envelope['output_format'] == 'json'
+        assert envelope['exit_code'] == 1
+        # Error envelope shape
+        assert envelope['error']['kind'] == 'parse'
+        assert envelope['error']['operation'] == 'argparse'
+        assert envelope['error']['retryable'] is False
+        assert envelope['error']['target'] == 'nonexistent-command'
+        assert 'hint' in envelope['error']
+
+    def test_unknown_command_json_equals_syntax(self) -> None:
+        """--output-format=json syntax also works."""
+        result = subprocess.run(
+            CLI + ['nonexistent-command', '--output-format=json'],
+            cwd=REPO_ROOT,
+            capture_output=True,
+            text=True,
+        )
+        assert result.returncode == 1
+        envelope = json.loads(result.stdout)
+        assert envelope['error']['kind'] == 'parse'
+
+    def test_unknown_command_text_mode_unchanged(self) -> None:
+        """Text mode (default) preserves argparse behavior: help to stderr, exit 2."""
+        result = subprocess.run(
+            CLI + ['nonexistent-command'],
+            cwd=REPO_ROOT,
+            capture_output=True,
+            text=True,
+        )
+        assert result.returncode == 2, f"text mode must preserve argparse exit 2; got {result.returncode}"
+        # stderr should have argparse error (help + error message)
+        assert 'invalid choice' in result.stderr
+        # stdout should be empty (no JSON leaked)
+        assert result.stdout == ''
+
+    def test_invalid_flag_json_mode_emits_envelope(self) -> None:
+        """Invalid flag at top level + --output-format json → envelope."""
+        result = subprocess.run(
+            CLI + ['--invalid-top-level-flag', '--output-format', 'json'],
+            cwd=REPO_ROOT,
+            capture_output=True,
+            text=True,
+        )
+        # argparse might reject before --output-format is parsed; still emit envelope
+        assert result.returncode == 1, f"got {result.returncode}: {result.stderr}"
+        envelope = json.loads(result.stdout)
+        assert envelope['error']['kind'] == 'parse'
+
+    def test_missing_command_no_json_flag_behaves_normally(self) -> None:
+        """No --output-format flag + missing command → normal argparse behavior."""
+        result = subprocess.run(
+            CLI,
+            cwd=REPO_ROOT,
+            capture_output=True,
+            text=True,
+        )
+        # argparse exits 2 when required subcommand is missing
+        assert result.returncode == 2
+        assert 'required' in result.stderr.lower() or 'the following arguments are required' in result.stderr.lower()
+
+    def test_valid_command_unaffected(self) -> None:
+        """Valid commands still work normally (no regression)."""
+        result = subprocess.run(
+            CLI + ['list-sessions', '--output-format', 'json'],
+            cwd=REPO_ROOT,
+            capture_output=True,
+            text=True,
+        )
+        assert result.returncode == 0
+        envelope = json.loads(result.stdout)
+        assert envelope['command'] == 'list-sessions'
+        assert 'sessions' in envelope
+
+    def test_parse_error_envelope_contains_common_fields(self) -> None:
+        """Parse-error envelope must include all common fields per SCHEMAS.md."""
+        result = subprocess.run(
+            CLI + ['bogus', '--output-format', 'json'],
+            cwd=REPO_ROOT,
+            capture_output=True,
+            text=True,
+        )
+        envelope = json.loads(result.stdout)
+        # All common fields required by SCHEMAS.md
+        for field in ('timestamp', 'command', 'exit_code', 'output_format', 'schema_version'):
+            assert field in envelope, f"common field '{field}' missing from parse-error envelope"
+
+
+class TestParseErrorSchemaCompliance:
+    """Parse-error envelope matches SCHEMAS.md error shape."""
+
+    def test_error_kind_is_parse(self) -> None:
+        """error.kind='parse' distinguishes argparse errors from runtime errors."""
+        result = subprocess.run(
+            CLI + ['unknown', '--output-format', 'json'],
+            cwd=REPO_ROOT,
+            capture_output=True,
+            text=True,
+        )
+        envelope = json.loads(result.stdout)
+        assert envelope['error']['kind'] == 'parse'
+
+    def test_error_retryable_false(self) -> None:
+        """Parse errors are never retryable (typo won't magically fix itself)."""
+        result = subprocess.run(
+            CLI + ['unknown', '--output-format', 'json'],
+            cwd=REPO_ROOT,
+            capture_output=True,
+            text=True,
+        )
+        envelope = json.loads(result.stdout)
+        assert envelope['error']['retryable'] is False
+
+
+class TestParseErrorStderrHygiene:
+    """#179: JSON mode must fully suppress argparse stderr output.
+
+    Before #179: stderr leaked argparse usage + error text even when --output-format json.
+    After #179: stderr is silent; envelope carries the real error message verbatim.
+    """
+
+    def test_json_mode_stderr_is_silent_on_unknown_command(self) -> None:
+        """Unknown command in JSON mode: stderr empty."""
+        result = subprocess.run(
+            CLI + ['nonexistent-cmd', '--output-format', 'json'],
+            cwd=REPO_ROOT,
+            capture_output=True,
+            text=True,
+        )
+        assert result.stderr == '', (
+            f"JSON mode stderr must be empty; got:\n{result.stderr!r}"
+        )
+
+    def test_json_mode_stderr_is_silent_on_missing_arg(self) -> None:
+        """Missing required arg in JSON mode: stderr empty (no argparse usage leak)."""
+        result = subprocess.run(
+            CLI + ['load-session', '--output-format', 'json'],
+            cwd=REPO_ROOT,
+            capture_output=True,
+            text=True,
+        )
+        assert result.stderr == '', (
+            f"JSON mode stderr must be empty on missing arg; got:\n{result.stderr!r}"
+        )
+
+    def test_json_mode_envelope_carries_real_argparse_message(self) -> None:
+        """#179: envelope.error.message contains argparse's actual text, not generic rejection."""
+        result = subprocess.run(
+            CLI + ['load-session', '--output-format', 'json'],
+            cwd=REPO_ROOT,
+            capture_output=True,
+            text=True,
+        )
+        envelope = json.loads(result.stdout)
+        # Real argparse message: 'the following arguments are required: session_id'
+        msg = envelope['error']['message']
+        assert 'session_id' in msg, (
+            f"envelope.error.message must carry real argparse text mentioning missing arg; got: {msg!r}"
+        )
+        assert 'required' in msg.lower(), (
+            f"envelope.error.message must indicate what is required; got: {msg!r}"
+        )
+
+    def test_json_mode_envelope_carries_invalid_choice_details(self) -> None:
+        """#179: unknown command envelope includes valid-choice list from argparse."""
+        result = subprocess.run(
+            CLI + ['typo-command', '--output-format', 'json'],
+            cwd=REPO_ROOT,
+            capture_output=True,
+            text=True,
+        )
+        envelope = json.loads(result.stdout)
+        msg = envelope['error']['message']
+        assert 'invalid choice' in msg.lower(), (
+            f"envelope must mention 'invalid choice'; got: {msg!r}"
+        )
+        # Should include at least one valid command name for discoverability
+        assert 'bootstrap' in msg or 'summary' in msg, (
+            f"envelope must include valid choices for discoverability; got: {msg!r}"
+        )
+
+    def test_text_mode_stderr_preserved_on_unknown_command(self) -> None:
+        """Text mode: argparse stderr behavior unchanged (backward compat)."""
+        result = subprocess.run(
+            CLI + ['nonexistent-cmd'],
+            cwd=REPO_ROOT,
+            capture_output=True,
+            text=True,
+        )
+        # Text mode still dumps argparse help to stderr
+        assert 'invalid choice' in result.stderr
+        assert result.returncode == 2

tests/test_porting_workspace.py

@@ -173,6 +173,105 @@ class PortingWorkspaceTests(unittest.TestCase):
         self.assertIn(session_id, result.stdout)
         self.assertIn('messages', result.stdout)
 
+    def test_list_sessions_cli_runs(self) -> None:
+        """#160: list-sessions CLI enumerates stored sessions in text + json."""
+        import json
+        import tempfile
+        from src.session_store import StoredSession, save_session
+
+        with tempfile.TemporaryDirectory() as tmp:
+            tmp_path = Path(tmp)
+            for sid in ['alpha', 'bravo']:
+                save_session(
+                    StoredSession(session_id=sid, messages=('hi',), input_tokens=1, output_tokens=2),
+                    tmp_path,
+                )
+            # text mode
+            text_result = subprocess.run(
+                [sys.executable, '-m', 'src.main', 'list-sessions', '--directory', str(tmp_path)],
+                check=True, capture_output=True, text=True,
+            )
+            self.assertIn('alpha', text_result.stdout)
+            self.assertIn('bravo', text_result.stdout)
+            # json mode
+            json_result = subprocess.run(
+                [sys.executable, '-m', 'src.main', 'list-sessions',
+                 '--directory', str(tmp_path), '--output-format', 'json'],
+                check=True, capture_output=True, text=True,
+            )
+            data = json.loads(json_result.stdout)
+            # Verify common envelope fields (SCHEMAS.md contract)
+            self.assertIn('timestamp', data)
+            self.assertEqual(data['command'], 'list-sessions')
+            self.assertEqual(data['schema_version'], '1.0')
+            # Verify command-specific fields
+            self.assertEqual(data['sessions'], ['alpha', 'bravo'])
+            self.assertEqual(data['count'], 2)
+
+    def test_delete_session_cli_idempotent(self) -> None:
+        """#160: delete-session CLI is idempotent (not-found is exit 0, status=not_found)."""
+        import json
+        import tempfile
+        from src.session_store import StoredSession, save_session
+
+        with tempfile.TemporaryDirectory() as tmp:
+            tmp_path = Path(tmp)
+            save_session(
+                StoredSession(session_id='once', messages=('hi',), input_tokens=1, output_tokens=2),
+                tmp_path,
+            )
+            # first delete: success
+            first = subprocess.run(
+                [sys.executable, '-m', 'src.main', 'delete-session', 'once',
+                 '--directory', str(tmp_path), '--output-format', 'json'],
+                capture_output=True, text=True,
+            )
+            self.assertEqual(first.returncode, 0)
+            envelope_first = json.loads(first.stdout)
+            # Verify common envelope fields (SCHEMAS.md contract)
+            self.assertIn('timestamp', envelope_first)
+            self.assertEqual(envelope_first['command'], 'delete-session')
+            self.assertEqual(envelope_first['exit_code'], 0)
+            self.assertEqual(envelope_first['schema_version'], '1.0')
+            # Verify command-specific fields
+            self.assertEqual(envelope_first['session_id'], 'once')
+            self.assertEqual(envelope_first['deleted'], True)
+            self.assertEqual(envelope_first['status'], 'deleted')
+            # second delete: idempotent, still exit 0
+            second = subprocess.run(
+                [sys.executable, '-m', 'src.main', 'delete-session', 'once',
+                 '--directory', str(tmp_path), '--output-format', 'json'],
+                capture_output=True, text=True,
+            )
+            self.assertEqual(second.returncode, 0)
+            envelope_second = json.loads(second.stdout)
+            self.assertEqual(envelope_second['session_id'], 'once')
+            self.assertEqual(envelope_second['deleted'], False)
+            self.assertEqual(envelope_second['status'], 'not_found')
+
+    def test_delete_session_cli_partial_failure_exit_1(self) -> None:
+        """#160: partial-failure (permission error) surfaces as exit 1 + typed JSON error."""
+        import json
+        import tempfile
+
+        with tempfile.TemporaryDirectory() as tmp:
+            tmp_path = Path(tmp)
+            bad = tmp_path / 'locked.json'
+            bad.mkdir()
+            try:
+                result = subprocess.run(
+                    [sys.executable, '-m', 'src.main', 'delete-session', 'locked',
+                     '--directory', str(tmp_path), '--output-format', 'json'],
+                    capture_output=True, text=True,
+                )
+                self.assertEqual(result.returncode, 1)
+                data = json.loads(result.stdout)
+                self.assertFalse(data['deleted'])
+                self.assertEqual(data['error']['kind'], 'session_delete_failed')
+                self.assertTrue(data['error']['retryable'])
+            finally:
+                bad.rmdir()
+
     def test_tool_permission_filtering_cli_runs(self) -> None:
         result = subprocess.run(
             [sys.executable, '-m', 'src.main', 'tools', '--limit', '10', '--deny-prefix', 'mcp'],

tests/test_run_turn_loop_cancellation.py

@@ -0,0 +1,156 @@
+"""Tests for run_turn_loop timeout triggering cooperative cancel (ROADMAP #164 Stage A).
+
+End-to-end integration: when the wall-clock timeout fires in run_turn_loop,
+the runtime must signal the cancel_event so any in-flight submit_message
+thread sees it at its next safe checkpoint and returns without mutating
+state.
+
+This closes the gap filed in #164: #161's timeout bounded caller wait but
+did not prevent ghost turns.
+"""
+
+from __future__ import annotations
+
+import sys
+import threading
+import time
+from pathlib import Path
+from unittest.mock import patch
+
+sys.path.insert(0, str(Path(__file__).resolve().parent.parent))
+
+from src.models import UsageSummary  # noqa: E402
+from src.query_engine import TurnResult  # noqa: E402
+from src.runtime import PortRuntime  # noqa: E402
+
+
+def _completed(prompt: str) -> TurnResult:
+    return TurnResult(
+        prompt=prompt,
+        output='ok',
+        matched_commands=(),
+        matched_tools=(),
+        permission_denials=(),
+        usage=UsageSummary(),
+        stop_reason='completed',
+    )
+
+
+class TestTimeoutPropagatesCancelEvent:
+    def test_runtime_passes_cancel_event_to_submit_message(self) -> None:
+        """submit_message receives a cancel_event when a deadline is in play."""
+        runtime = PortRuntime()
+        captured_event: list[threading.Event | None] = []
+
+        def _capture(prompt, commands, tools, denials, cancel_event=None):
+            captured_event.append(cancel_event)
+            return _completed(prompt)
+
+        with patch('src.runtime.QueryEnginePort.from_workspace') as mock_factory:
+            engine = mock_factory.return_value
+            engine.submit_message.side_effect = _capture
+
+            runtime.run_turn_loop(
+                'hello', max_turns=1, timeout_seconds=5.0,
+            )
+
+            # Runtime passed a real Event object, not None
+            assert len(captured_event) == 1
+            assert isinstance(captured_event[0], threading.Event)
+
+    def test_legacy_no_timeout_does_not_pass_cancel_event(self) -> None:
+        """Without timeout_seconds, the cancel_event is None (legacy behaviour)."""
+        runtime = PortRuntime()
+        captured_kwargs: list[dict] = []
+
+        def _capture(prompt, commands, tools, denials):
+            # Legacy call signature: no cancel_event kwarg
+            captured_kwargs.append({'prompt': prompt})
+            return _completed(prompt)
+
+        with patch('src.runtime.QueryEnginePort.from_workspace') as mock_factory:
+            engine = mock_factory.return_value
+            engine.submit_message.side_effect = _capture
+
+            runtime.run_turn_loop('hello', max_turns=1)
+
+            # Legacy path didn't pass cancel_event at all
+            assert len(captured_kwargs) == 1
+
+    def test_timeout_sets_cancel_event_before_returning(self) -> None:
+        """When timeout fires mid-call, the event is set and the still-running
+        thread would see 'cancelled' if it checks before returning."""
+        runtime = PortRuntime()
+        observed_events_at_checkpoint: list[bool] = []
+        release = threading.Event()  # test-side release so the thread doesn't leak forever
+
+        def _slow_submit(prompt, commands, tools, denials, cancel_event=None):
+            # Simulate provider work: block until either cancel or a test-side release.
+            # If cancel fires, check if the event is observably set.
+            start = time.monotonic()
+            while time.monotonic() - start < 2.0:
+                if cancel_event is not None and cancel_event.is_set():
+                    observed_events_at_checkpoint.append(True)
+                    return TurnResult(
+                        prompt=prompt, output='',
+                        matched_commands=(), matched_tools=(),
+                        permission_denials=(), usage=UsageSummary(),
+                        stop_reason='cancelled',
+                    )
+                if release.is_set():
+                    break
+                time.sleep(0.05)
+            return _completed(prompt)
+
+        with patch('src.runtime.QueryEnginePort.from_workspace') as mock_factory:
+            engine = mock_factory.return_value
+            engine.submit_message.side_effect = _slow_submit
+
+            # Tight deadline: 0.2s, submit will be mid-loop when timeout fires
+            start = time.monotonic()
+            results = runtime.run_turn_loop(
+                'hello', max_turns=1, timeout_seconds=0.2,
+            )
+            elapsed = time.monotonic() - start
+            release.set()  # let the background thread exit cleanly
+
+            # Runtime returned a timeout TurnResult to the caller
+            assert results[-1].stop_reason == 'timeout'
+            # And it happened within a reasonable window of the deadline
+            assert elapsed < 1.5, f'runtime did not honour deadline: {elapsed:.2f}s'
+
+            # Give the background thread a moment to observe the cancel.
+            # We don't assert on it directly (thread-level observability is
+            # timing-dependent), but the contract is: the event IS set, so any
+            # cooperative checkpoint will see it.
+            time.sleep(0.3)
+
+
+class TestCancelEventSharedAcrossTurns:
+    """Event is created once per run_turn_loop invocation and shared across turns."""
+
+    def test_same_event_threaded_to_every_submit_message(self) -> None:
+        runtime = PortRuntime()
+        captured_events: list[threading.Event] = []
+
+        def _capture(prompt, commands, tools, denials, cancel_event=None):
+            if cancel_event is not None:
+                captured_events.append(cancel_event)
+            return _completed(prompt)
+
+        with patch('src.runtime.QueryEnginePort.from_workspace') as mock_factory:
+            engine = mock_factory.return_value
+            engine.submit_message.side_effect = _capture
+
+            runtime.run_turn_loop(
+                'hello', max_turns=3, timeout_seconds=5.0,
+                continuation_prompt='continue',
+            )
+
+            # All 3 turns received the same event object (same identity)
+            assert len(captured_events) == 3
+            assert all(e is captured_events[0] for e in captured_events), (
+                'runtime must share one cancel_event across turns, not create '
+                'a new one per turn \u2014 otherwise a late-arriving cancel on turn '
+                'N-1 cannot affect turn N'
+            )

tests/test_run_turn_loop_continuation.py

@@ -0,0 +1,161 @@
+"""Tests for run_turn_loop continuation contract (ROADMAP #163).
+
+The deprecated ``f'{prompt} [turn N]'`` suffix injection is gone. Verifies:
+- No ``[turn N]`` string ever lands in a submitted prompt
+- Default (``continuation_prompt=None``) stops the loop after turn 0
+- Explicit ``continuation_prompt`` is submitted verbatim on subsequent turns
+- The first turn always gets the original prompt, not the continuation
+"""
+
+from __future__ import annotations
+
+import subprocess
+import sys
+from pathlib import Path
+from unittest.mock import patch
+
+sys.path.insert(0, str(Path(__file__).resolve().parent.parent))
+
+from src.models import UsageSummary  # noqa: E402
+from src.query_engine import TurnResult  # noqa: E402
+from src.runtime import PortRuntime  # noqa: E402
+
+
+def _completed_result(prompt: str) -> TurnResult:
+    return TurnResult(
+        prompt=prompt,
+        output='ok',
+        matched_commands=(),
+        matched_tools=(),
+        permission_denials=(),
+        usage=UsageSummary(),
+        stop_reason='completed',
+    )
+
+
+class TestNoTurnSuffixInjection:
+    """Core acceptance: no prompt submitted to the engine ever contains '[turn N]'."""
+
+    def test_default_path_submits_original_prompt_only(self) -> None:
+        runtime = PortRuntime()
+        submitted: list[str] = []
+
+        def _capture(prompt, commands, tools, denials):
+            submitted.append(prompt)
+            return _completed_result(prompt)
+
+        with patch('src.runtime.QueryEnginePort.from_workspace') as mock_factory:
+            engine = mock_factory.return_value
+            engine.submit_message.side_effect = _capture
+
+            runtime.run_turn_loop('investigate this bug', max_turns=3)
+
+            # Without continuation_prompt, only turn 0 should run
+            assert submitted == ['investigate this bug']
+            # And no '[turn N]' suffix anywhere
+            for p in submitted:
+                assert '[turn' not in p, f'found [turn suffix in submitted prompt: {p!r}'
+
+    def test_with_continuation_prompt_no_turn_suffix(self) -> None:
+        runtime = PortRuntime()
+        submitted: list[str] = []
+
+        def _capture(prompt, commands, tools, denials):
+            submitted.append(prompt)
+            return _completed_result(prompt)
+
+        with patch('src.runtime.QueryEnginePort.from_workspace') as mock_factory:
+            engine = mock_factory.return_value
+            engine.submit_message.side_effect = _capture
+
+            runtime.run_turn_loop(
+                'investigate this bug',
+                max_turns=3,
+                continuation_prompt='Continue.',
+            )
+
+            # Turn 0 = original, turns 1-2 = continuation, verbatim
+            assert submitted == ['investigate this bug', 'Continue.', 'Continue.']
+            # No harness-injected suffix anywhere
+            for p in submitted:
+                assert '[turn' not in p
+                assert not p.endswith(']')
+
+
+class TestContinuationDefaultStopsAfterTurnZero:
+    def test_default_continuation_returns_one_result(self) -> None:
+        runtime = PortRuntime()
+        with patch('src.runtime.QueryEnginePort.from_workspace') as mock_factory:
+            engine = mock_factory.return_value
+            engine.submit_message.side_effect = lambda p, *_: _completed_result(p)
+
+            results = runtime.run_turn_loop('x', max_turns=5)
+            assert len(results) == 1
+            assert results[0].prompt == 'x'
+
+    def test_default_continuation_does_not_call_engine_twice(self) -> None:
+        runtime = PortRuntime()
+        with patch('src.runtime.QueryEnginePort.from_workspace') as mock_factory:
+            engine = mock_factory.return_value
+            engine.submit_message.side_effect = lambda p, *_: _completed_result(p)
+
+            runtime.run_turn_loop('x', max_turns=10)
+            # Exactly one submit_message call despite max_turns=10
+            assert engine.submit_message.call_count == 1
+
+
+class TestExplicitContinuationBehaviour:
+    def test_first_turn_always_uses_original_prompt(self) -> None:
+        runtime = PortRuntime()
+        captured: list[str] = []
+
+        def _capture(prompt, *_):
+            captured.append(prompt)
+            return _completed_result(prompt)
+
+        with patch('src.runtime.QueryEnginePort.from_workspace') as mock_factory:
+            engine = mock_factory.return_value
+            engine.submit_message.side_effect = _capture
+
+            runtime.run_turn_loop(
+                'original task', max_turns=2, continuation_prompt='keep going'
+            )
+
+            assert captured[0] == 'original task'
+            assert captured[1] == 'keep going'
+
+    def test_continuation_respects_max_turns(self) -> None:
+        runtime = PortRuntime()
+        with patch('src.runtime.QueryEnginePort.from_workspace') as mock_factory:
+            engine = mock_factory.return_value
+            engine.submit_message.side_effect = lambda p, *_: _completed_result(p)
+
+            runtime.run_turn_loop('x', max_turns=3, continuation_prompt='go')
+            assert engine.submit_message.call_count == 3
+
+
+class TestCLIContinuationFlag:
+    def test_cli_default_runs_one_turn(self) -> None:
+        """Without --continuation-prompt, CLI should emit exactly '## Turn 1'."""
+        result = subprocess.run(
+            [sys.executable, '-m', 'src.main', 'turn-loop', 'review MCP tool',
+             '--max-turns', '3', '--structured-output'],
+            check=True, capture_output=True, text=True,
+        )
+        assert '## Turn 1' in result.stdout
+        assert '## Turn 2' not in result.stdout
+        assert '[turn' not in result.stdout
+
+    def test_cli_with_continuation_runs_multiple_turns(self) -> None:
+        """With --continuation-prompt, CLI should run up to max_turns."""
+        result = subprocess.run(
+            [sys.executable, '-m', 'src.main', 'turn-loop', 'review MCP tool',
+             '--max-turns', '2', '--structured-output',
+             '--continuation-prompt', 'continue'],
+            check=True, capture_output=True, text=True,
+        )
+        assert '## Turn 1' in result.stdout
+        assert '## Turn 2' in result.stdout
+        # The continuation text is visible (it's submitted as the turn prompt)
+        # but no harness-injected [turn N] suffix
+        assert '[turn' not in result.stdout

tests/test_run_turn_loop_permissions.py

@@ -0,0 +1,95 @@
+"""Tests for run_turn_loop permission denials parity (ROADMAP #159).
+
+Verifies that multi-turn sessions have the same security posture as
+single-turn bootstrap_session: denied_tools are inferred from matches
+and threaded through every turn, not hardcoded empty.
+"""
+
+from __future__ import annotations
+
+import sys
+from pathlib import Path
+
+sys.path.insert(0, str(Path(__file__).resolve().parent.parent))
+
+from src.runtime import PortRuntime  # noqa: E402
+
+
+class TestPermissionDenialsInTurnLoop:
+    """#159: permission denials must be non-empty in run_turn_loop,
+    matching what bootstrap_session produces for the same prompt.
+    """
+
+    def test_turn_loop_surfaces_permission_denials_like_bootstrap(self) -> None:
+        """Symmetry check: turn_loop and bootstrap_session infer the same denials."""
+        runtime = PortRuntime()
+        prompt = 'run bash ls'
+
+        # Single-turn via bootstrap
+        bootstrap_result = runtime.bootstrap_session(prompt)
+        bootstrap_denials = bootstrap_result.turn_result.permission_denials
+
+        # Multi-turn via run_turn_loop (single turn, no continuation)
+        loop_results = runtime.run_turn_loop(prompt, max_turns=1)
+        loop_denials = loop_results[0].permission_denials
+
+        # Both should infer denials for bash-family tools
+        assert len(bootstrap_denials) > 0, (
+            'bootstrap_session should deny bash-family tools'
+        )
+        assert len(loop_denials) > 0, (
+            f'#159 regression: run_turn_loop returned empty denials; '
+            f'expected {len(bootstrap_denials)} like bootstrap_session'
+        )
+
+        # The denial kinds should match (both deny the same tools)
+        bootstrap_denied_names = {d.tool_name for d in bootstrap_denials}
+        loop_denied_names = {d.tool_name for d in loop_denials}
+        assert bootstrap_denied_names == loop_denied_names, (
+            f'asymmetric denials: bootstrap denied {bootstrap_denied_names}, '
+            f'loop denied {loop_denied_names}'
+        )
+
+    def test_turn_loop_with_continuation_preserves_denials(self) -> None:
+        """Denials are inferred once at loop start, then passed to every turn."""
+        runtime = PortRuntime()
+        from unittest.mock import patch
+
+        with patch('src.runtime.QueryEnginePort.from_workspace') as mock_factory:
+            from src.models import UsageSummary
+            from src.query_engine import TurnResult
+
+            engine = mock_factory.return_value
+            submitted_denials: list[tuple] = []
+
+            def _capture(prompt, commands, tools, denials):
+                submitted_denials.append(denials)
+                return TurnResult(
+                    prompt=prompt,
+                    output='ok',
+                    matched_commands=(),
+                    matched_tools=(),
+                    permission_denials=denials,  # echo back the denials
+                    usage=UsageSummary(),
+                    stop_reason='completed',
+                )
+
+            engine.submit_message.side_effect = _capture
+
+            loop_results = runtime.run_turn_loop(
+                'run bash rm', max_turns=2, continuation_prompt='continue'
+            )
+
+            # Both turn 0 and turn 1 should have received the same denials
+            assert len(submitted_denials) == 2
+            assert submitted_denials[0] == submitted_denials[1], (
+                'denials should be consistent across all turns'
+            )
+            # And they should be non-empty (bash is destructive)
+            assert len(submitted_denials[0]) > 0, (
+                'turn-loop denials were empty — #159 regression'
+            )
+
+            # Turn results should reflect the denials that were passed
+            for result in loop_results:
+                assert len(result.permission_denials) > 0

tests/test_run_turn_loop_timeout.py

@@ -0,0 +1,179 @@
+"""Tests for run_turn_loop wall-clock timeout (ROADMAP #161).
+
+Covers:
+- timeout_seconds=None preserves legacy unbounded behaviour
+- timeout_seconds=X aborts a hung turn and emits stop_reason='timeout'
+- Timeout budget is total wall-clock across all turns, not per-turn
+- Already-exhausted budget short-circuits before the first turn runs
+- Legacy path still runs without a ThreadPoolExecutor in the way
+"""
+
+from __future__ import annotations
+
+import sys
+import time
+from pathlib import Path
+from unittest.mock import patch
+
+import pytest
+
+sys.path.insert(0, str(Path(__file__).resolve().parent.parent))
+
+from src.models import UsageSummary  # noqa: E402
+from src.query_engine import TurnResult  # noqa: E402
+from src.runtime import PortRuntime  # noqa: E402
+
+
+def _completed_result(prompt: str) -> TurnResult:
+    return TurnResult(
+        prompt=prompt,
+        output='ok',
+        matched_commands=(),
+        matched_tools=(),
+        permission_denials=(),
+        usage=UsageSummary(),
+        stop_reason='completed',
+    )
+
+
+class TestLegacyUnboundedBehaviour:
+    def test_no_timeout_preserves_existing_behaviour(self) -> None:
+        """timeout_seconds=None must not change legacy path at all."""
+        results = PortRuntime().run_turn_loop('review MCP tool', max_turns=2)
+        assert len(results) >= 1
+        for r in results:
+            assert r.stop_reason in {'completed', 'max_turns_reached', 'max_budget_reached'}
+            assert r.stop_reason != 'timeout'
+
+
+class TestTimeoutAbortsHungTurn:
+    def test_hung_submit_message_times_out(self) -> None:
+        """A stalled submit_message must be aborted and emit stop_reason='timeout'."""
+        runtime = PortRuntime()
+
+        # #164 Stage A: runtime now passes cancel_event as a 5th positional
+        # arg on the timeout path, so mocks must accept it (even if they ignore it).
+        def _hang(prompt, commands, tools, denials, cancel_event=None):
+            time.sleep(5.0)  # would block the loop
+            return _completed_result(prompt)
+
+        with patch('src.runtime.QueryEnginePort.from_workspace') as mock_factory:
+            engine = mock_factory.return_value
+            engine.config = None  # attribute-assigned in run_turn_loop
+            engine.submit_message.side_effect = _hang
+
+            start = time.monotonic()
+            results = runtime.run_turn_loop(
+                'review MCP tool', max_turns=3, timeout_seconds=0.3
+            )
+            elapsed = time.monotonic() - start
+
+            # Must exit well under the 5s hang
+            assert elapsed < 1.5, f'run_turn_loop did not honor timeout: {elapsed:.2f}s'
+            assert len(results) == 1
+            assert results[-1].stop_reason == 'timeout'
+
+
+class TestTimeoutBudgetIsTotal:
+    def test_budget_is_cumulative_across_turns(self) -> None:
+        """timeout_seconds is total wall-clock across all turns, not per-turn.
+
+        #163 interaction: multi-turn behaviour now requires an explicit
+        ``continuation_prompt``; otherwise the loop stops after turn 0 and
+        the cumulative-budget contract is trivially satisfied. We supply one
+        here so the test actually exercises the cross-turn deadline.
+        """
+        runtime = PortRuntime()
+        call_count = {'n': 0}
+
+        def _slow(prompt, commands, tools, denials, cancel_event=None):
+            call_count['n'] += 1
+            time.sleep(0.4)  # each turn burns 0.4s
+            return _completed_result(prompt)
+
+        with patch('src.runtime.QueryEnginePort.from_workspace') as mock_factory:
+            engine = mock_factory.return_value
+            engine.submit_message.side_effect = _slow
+
+            start = time.monotonic()
+            # 0.6s budget, 0.4s per turn. First turn completes (~0.4s),
+            # second turn times out before finishing.
+            results = runtime.run_turn_loop(
+                'review MCP tool',
+                max_turns=5,
+                timeout_seconds=0.6,
+                continuation_prompt='continue',
+            )
+            elapsed = time.monotonic() - start
+
+            # Should exit at around 0.6s, not 2.0s (5 turns * 0.4s)
+            assert elapsed < 1.5, f'cumulative budget not honored: {elapsed:.2f}s'
+            # Last result should be the timeout
+            assert results[-1].stop_reason == 'timeout'
+
+
+class TestExhaustedBudget:
+    def test_zero_timeout_short_circuits_first_turn(self) -> None:
+        """timeout_seconds=0 emits timeout before the first submit_message call."""
+        runtime = PortRuntime()
+
+        with patch('src.runtime.QueryEnginePort.from_workspace') as mock_factory:
+            engine = mock_factory.return_value
+            # submit_message should never be called when budget is already 0
+            engine.submit_message.side_effect = AssertionError(
+                'submit_message should not run when budget is exhausted'
+            )
+
+            results = runtime.run_turn_loop(
+                'review MCP tool', max_turns=3, timeout_seconds=0.0
+            )
+
+            assert len(results) == 1
+            assert results[0].stop_reason == 'timeout'
+
+
+class TestTimeoutResultShape:
+    def test_timeout_result_has_correct_prompt_and_matches(self) -> None:
+        """Synthetic TurnResult on timeout must carry the turn's prompt + routed matches."""
+        runtime = PortRuntime()
+
+        def _hang(prompt, commands, tools, denials, cancel_event=None):
+            time.sleep(5.0)
+            return _completed_result(prompt)
+
+        with patch('src.runtime.QueryEnginePort.from_workspace') as mock_factory:
+            engine = mock_factory.return_value
+            engine.submit_message.side_effect = _hang
+
+            results = runtime.run_turn_loop(
+                'review MCP tool', max_turns=2, timeout_seconds=0.2
+            )
+
+            timeout_result = results[-1]
+            assert timeout_result.stop_reason == 'timeout'
+            assert timeout_result.prompt == 'review MCP tool'
+            # matched_commands / matched_tools should still be populated from routing,
+            # so downstream transcripts don't lose the routing context.
+            # These may be empty tuples depending on routing; they must be tuples.
+            assert isinstance(timeout_result.matched_commands, tuple)
+            assert isinstance(timeout_result.matched_tools, tuple)
+            assert isinstance(timeout_result.usage, UsageSummary)
+
+
+class TestNegativeTimeoutTreatedAsExhausted:
+    def test_negative_timeout_short_circuits(self) -> None:
+        """A negative budget should behave identically to exhausted."""
+        runtime = PortRuntime()
+
+        with patch('src.runtime.QueryEnginePort.from_workspace') as mock_factory:
+            engine = mock_factory.return_value
+            engine.submit_message.side_effect = AssertionError(
+                'submit_message should not run when budget is negative'
+            )
+
+            results = runtime.run_turn_loop(
+                'review MCP tool', max_turns=3, timeout_seconds=-1.0
+            )
+
+            assert len(results) == 1
+            assert results[0].stop_reason == 'timeout'

tests/test_session_store.py

@@ -0,0 +1,173 @@
+"""Tests for session_store CRUD surface (ROADMAP #160).
+
+Covers:
+- list_sessions enumeration
+- session_exists boolean check
+- delete_session idempotency + race-safety + partial-failure contract
+- SessionNotFoundError typing (KeyError subclass)
+- SessionDeleteError typing (OSError subclass)
+"""
+
+from __future__ import annotations
+
+import sys
+from pathlib import Path
+
+import pytest
+
+sys.path.insert(0, str(Path(__file__).resolve().parent.parent / 'src'))
+
+from session_store import (  # noqa: E402
+    StoredSession,
+    SessionDeleteError,
+    SessionNotFoundError,
+    delete_session,
+    list_sessions,
+    load_session,
+    save_session,
+    session_exists,
+)
+
+
+def _make_session(session_id: str) -> StoredSession:
+    return StoredSession(
+        session_id=session_id,
+        messages=('hello',),
+        input_tokens=1,
+        output_tokens=2,
+    )
+
+
+class TestListSessions:
+    def test_empty_directory_returns_empty_list(self, tmp_path: Path) -> None:
+        assert list_sessions(tmp_path) == []
+
+    def test_nonexistent_directory_returns_empty_list(self, tmp_path: Path) -> None:
+        missing = tmp_path / 'never-created'
+        assert list_sessions(missing) == []
+
+    def test_lists_saved_sessions_sorted(self, tmp_path: Path) -> None:
+        save_session(_make_session('charlie'), tmp_path)
+        save_session(_make_session('alpha'), tmp_path)
+        save_session(_make_session('bravo'), tmp_path)
+        assert list_sessions(tmp_path) == ['alpha', 'bravo', 'charlie']
+
+    def test_ignores_non_json_files(self, tmp_path: Path) -> None:
+        save_session(_make_session('real'), tmp_path)
+        (tmp_path / 'notes.txt').write_text('ignore me')
+        (tmp_path / 'data.yaml').write_text('ignore me too')
+        assert list_sessions(tmp_path) == ['real']
+
+
+class TestSessionExists:
+    def test_returns_true_for_saved_session(self, tmp_path: Path) -> None:
+        save_session(_make_session('present'), tmp_path)
+        assert session_exists('present', tmp_path) is True
+
+    def test_returns_false_for_missing_session(self, tmp_path: Path) -> None:
+        assert session_exists('absent', tmp_path) is False
+
+    def test_returns_false_for_nonexistent_directory(self, tmp_path: Path) -> None:
+        missing = tmp_path / 'never-created'
+        assert session_exists('anything', missing) is False
+
+
+class TestLoadSession:
+    def test_raises_typed_error_on_missing(self, tmp_path: Path) -> None:
+        with pytest.raises(SessionNotFoundError) as exc_info:
+            load_session('nonexistent', tmp_path)
+        assert 'nonexistent' in str(exc_info.value)
+
+    def test_not_found_error_is_keyerror_subclass(self, tmp_path: Path) -> None:
+        """Orchestrators catching KeyError should still work."""
+        with pytest.raises(KeyError):
+            load_session('nonexistent', tmp_path)
+
+    def test_not_found_error_is_not_filenotfounderror(self, tmp_path: Path) -> None:
+        """Callers can distinguish 'not found' from IO errors."""
+        with pytest.raises(SessionNotFoundError):
+            load_session('nonexistent', tmp_path)
+        # Specifically, it should NOT match bare FileNotFoundError alone
+        # (SessionNotFoundError inherits from KeyError, not FileNotFoundError)
+        assert not issubclass(SessionNotFoundError, FileNotFoundError)
+
+
+class TestDeleteSessionIdempotency:
+    """Contract: delete_session(x) followed by delete_session(x) must be safe."""
+
+    def test_first_delete_returns_true(self, tmp_path: Path) -> None:
+        save_session(_make_session('to-delete'), tmp_path)
+        assert delete_session('to-delete', tmp_path) is True
+
+    def test_second_delete_returns_false_no_raise(self, tmp_path: Path) -> None:
+        """Idempotency: deleting an already-deleted session is a no-op."""
+        save_session(_make_session('once'), tmp_path)
+        delete_session('once', tmp_path)
+        # Second call must not raise
+        assert delete_session('once', tmp_path) is False
+
+    def test_delete_nonexistent_returns_false_no_raise(self, tmp_path: Path) -> None:
+        """Never-existed session is treated identically to already-deleted."""
+        assert delete_session('never-existed', tmp_path) is False
+
+    def test_delete_removes_only_target(self, tmp_path: Path) -> None:
+        save_session(_make_session('keep'), tmp_path)
+        save_session(_make_session('remove'), tmp_path)
+        delete_session('remove', tmp_path)
+        assert list_sessions(tmp_path) == ['keep']
+
+
+class TestDeleteSessionPartialFailure:
+    """Contract: file exists but cannot be removed -> SessionDeleteError."""
+
+    def test_partial_failure_raises_session_delete_error(self, tmp_path: Path) -> None:
+        """If a directory exists where a session file should be, unlink fails."""
+        bad_path = tmp_path / 'locked.json'
+        bad_path.mkdir()
+        try:
+            with pytest.raises(SessionDeleteError) as exc_info:
+                delete_session('locked', tmp_path)
+            # Underlying cause should be wrapped
+            assert exc_info.value.__cause__ is not None
+            assert isinstance(exc_info.value.__cause__, OSError)
+        finally:
+            bad_path.rmdir()
+
+    def test_delete_error_is_oserror_subclass(self, tmp_path: Path) -> None:
+        """Callers catching OSError should still work for retries."""
+        bad_path = tmp_path / 'locked.json'
+        bad_path.mkdir()
+        try:
+            with pytest.raises(OSError):
+                delete_session('locked', tmp_path)
+        finally:
+            bad_path.rmdir()
+
+
+class TestRaceSafety:
+    """Contract: delete_session must be race-safe between exists-check and unlink."""
+
+    def test_concurrent_deletion_returns_false_not_raises(
+        self, tmp_path: Path, monkeypatch
+    ) -> None:
+        """If another process deletes between exists-check and unlink, return False."""
+        save_session(_make_session('racy'), tmp_path)
+        # Simulate: file disappears right before unlink (concurrent deletion)
+        path = tmp_path / 'racy.json'
+        path.unlink()
+        # Now delete_session should return False, not raise
+        assert delete_session('racy', tmp_path) is False
+
+
+class TestRoundtrip:
+    def test_save_list_load_delete_cycle(self, tmp_path: Path) -> None:
+        session = _make_session('lifecycle')
+        save_session(session, tmp_path)
+        assert 'lifecycle' in list_sessions(tmp_path)
+        assert session_exists('lifecycle', tmp_path)
+        loaded = load_session('lifecycle', tmp_path)
+        assert loaded.session_id == 'lifecycle'
+        assert loaded.messages == ('hello',)
+        assert delete_session('lifecycle', tmp_path) is True
+        assert not session_exists('lifecycle', tmp_path)
+        assert list_sessions(tmp_path) == []

tests/test_show_command_tool_output_format.py

@@ -0,0 +1,203 @@
+"""Tests for --output-format flag on show-command and show-tool (ROADMAP #167).
+
+Verifies parity with session-lifecycle CLI family (#160/#165/#166):
+- show-command and show-tool now accept --output-format {text,json}
+- Found case returns success with JSON envelope: {name, found: true, source_hint, responsibility}
+- Not-found case returns typed error envelope: {name, found: false, error: {kind, message, retryable}}
+- Legacy text output (default) unchanged for backward compat
+- Exit code 0 on success, 1 on not-found (matching load-session contract)
+"""
+
+from __future__ import annotations
+
+import json
+import subprocess
+import sys
+from pathlib import Path
+
+sys.path.insert(0, str(Path(__file__).resolve().parent.parent))
+
+
+class TestShowCommandOutputFormat:
+    """show-command --output-format {text,json} parity with session-lifecycle family."""
+
+    def test_show_command_found_json(self) -> None:
+        """show-command with found entry returns JSON envelope."""
+        result = subprocess.run(
+            [sys.executable, '-m', 'src.main', 'show-command', 'add-dir', '--output-format', 'json'],
+            cwd=Path(__file__).resolve().parent.parent,
+            capture_output=True,
+            text=True,
+        )
+        assert result.returncode == 0, f'Expected exit 0, got {result.returncode}: {result.stderr}'
+
+        envelope = json.loads(result.stdout)
+        assert envelope['found'] is True
+        assert envelope['name'] == 'add-dir'
+        assert 'source_hint' in envelope
+        assert 'responsibility' in envelope
+        # No error field when found
+        assert 'error' not in envelope
+
+    def test_show_command_not_found_json(self) -> None:
+        """show-command with missing entry returns typed error envelope."""
+        result = subprocess.run(
+            [sys.executable, '-m', 'src.main', 'show-command', 'nonexistent-cmd', '--output-format', 'json'],
+            cwd=Path(__file__).resolve().parent.parent,
+            capture_output=True,
+            text=True,
+        )
+        assert result.returncode == 1, f'Expected exit 1 on not-found, got {result.returncode}'
+
+        envelope = json.loads(result.stdout)
+        assert envelope['found'] is False
+        assert envelope['name'] == 'nonexistent-cmd'
+        assert envelope['error']['kind'] == 'command_not_found'
+        assert envelope['error']['retryable'] is False
+        # No source_hint/responsibility when not found
+        assert 'source_hint' not in envelope or envelope.get('source_hint') is None
+        assert 'responsibility' not in envelope or envelope.get('responsibility') is None
+
+    def test_show_command_text_mode_backward_compat(self) -> None:
+        """show-command text mode (default) is unchanged from pre-#167."""
+        result = subprocess.run(
+            [sys.executable, '-m', 'src.main', 'show-command', 'add-dir'],
+            cwd=Path(__file__).resolve().parent.parent,
+            capture_output=True,
+            text=True,
+        )
+        assert result.returncode == 0
+
+        # Text output is newline-separated (name, source_hint, responsibility)
+        lines = result.stdout.strip().split('\n')
+        assert len(lines) == 3
+        assert lines[0] == 'add-dir'
+        assert 'commands/add-dir/add-dir.tsx' in lines[1]
+
+    def test_show_command_text_mode_not_found(self) -> None:
+        """show-command text mode on not-found returns prose error."""
+        result = subprocess.run(
+            [sys.executable, '-m', 'src.main', 'show-command', 'missing'],
+            cwd=Path(__file__).resolve().parent.parent,
+            capture_output=True,
+            text=True,
+        )
+        assert result.returncode == 1
+        assert 'not found' in result.stdout.lower()
+        assert 'missing' in result.stdout
+
+    def test_show_command_default_is_text(self) -> None:
+        """Omitting --output-format defaults to text."""
+        result_implicit = subprocess.run(
+            [sys.executable, '-m', 'src.main', 'show-command', 'add-dir'],
+            cwd=Path(__file__).resolve().parent.parent,
+            capture_output=True,
+            text=True,
+        )
+        result_explicit = subprocess.run(
+            [sys.executable, '-m', 'src.main', 'show-command', 'add-dir', '--output-format', 'text'],
+            cwd=Path(__file__).resolve().parent.parent,
+            capture_output=True,
+            text=True,
+        )
+        assert result_implicit.stdout == result_explicit.stdout
+
+
+class TestShowToolOutputFormat:
+    """show-tool --output-format {text,json} parity with session-lifecycle family."""
+
+    def test_show_tool_found_json(self) -> None:
+        """show-tool with found entry returns JSON envelope."""
+        result = subprocess.run(
+            [sys.executable, '-m', 'src.main', 'show-tool', 'BashTool', '--output-format', 'json'],
+            cwd=Path(__file__).resolve().parent.parent,
+            capture_output=True,
+            text=True,
+        )
+        assert result.returncode == 0, f'Expected exit 0, got {result.returncode}: {result.stderr}'
+
+        envelope = json.loads(result.stdout)
+        assert envelope['found'] is True
+        assert envelope['name'] == 'BashTool'
+        assert 'source_hint' in envelope
+        assert 'responsibility' in envelope
+        assert 'error' not in envelope
+
+    def test_show_tool_not_found_json(self) -> None:
+        """show-tool with missing entry returns typed error envelope."""
+        result = subprocess.run(
+            [sys.executable, '-m', 'src.main', 'show-tool', 'NotARealTool', '--output-format', 'json'],
+            cwd=Path(__file__).resolve().parent.parent,
+            capture_output=True,
+            text=True,
+        )
+        assert result.returncode == 1, f'Expected exit 1 on not-found, got {result.returncode}'
+
+        envelope = json.loads(result.stdout)
+        assert envelope['found'] is False
+        assert envelope['name'] == 'NotARealTool'
+        assert envelope['error']['kind'] == 'tool_not_found'
+        assert envelope['error']['retryable'] is False
+
+    def test_show_tool_text_mode_backward_compat(self) -> None:
+        """show-tool text mode (default) is unchanged from pre-#167."""
+        result = subprocess.run(
+            [sys.executable, '-m', 'src.main', 'show-tool', 'BashTool'],
+            cwd=Path(__file__).resolve().parent.parent,
+            capture_output=True,
+            text=True,
+        )
+        assert result.returncode == 0
+
+        lines = result.stdout.strip().split('\n')
+        assert len(lines) == 3
+        assert lines[0] == 'BashTool'
+        assert 'tools/BashTool/BashTool.tsx' in lines[1]
+
+
+class TestShowCommandToolFormatParity:
+    """Verify symmetry between show-command and show-tool formats."""
+
+    def test_both_accept_output_format_flag(self) -> None:
+        """Both commands accept the same --output-format choices."""
+        # Just ensure both fail with invalid choice (they accept text/json)
+        result_cmd = subprocess.run(
+            [sys.executable, '-m', 'src.main', 'show-command', 'add-dir', '--output-format', 'invalid'],
+            cwd=Path(__file__).resolve().parent.parent,
+            capture_output=True,
+            text=True,
+        )
+        result_tool = subprocess.run(
+            [sys.executable, '-m', 'src.main', 'show-tool', 'BashTool', '--output-format', 'invalid'],
+            cwd=Path(__file__).resolve().parent.parent,
+            capture_output=True,
+            text=True,
+        )
+        # Both should fail with argument parser error
+        assert result_cmd.returncode != 0
+        assert result_tool.returncode != 0
+        assert 'invalid choice' in result_cmd.stderr
+        assert 'invalid choice' in result_tool.stderr
+
+    def test_json_envelope_shape_consistency(self) -> None:
+        """Both commands return consistent JSON envelope shape."""
+        cmd_result = subprocess.run(
+            [sys.executable, '-m', 'src.main', 'show-command', 'add-dir', '--output-format', 'json'],
+            cwd=Path(__file__).resolve().parent.parent,
+            capture_output=True,
+            text=True,
+        )
+        tool_result = subprocess.run(
+            [sys.executable, '-m', 'src.main', 'show-tool', 'BashTool', '--output-format', 'json'],
+            cwd=Path(__file__).resolve().parent.parent,
+            capture_output=True,
+            text=True,
+        )
+
+        cmd_envelope = json.loads(cmd_result.stdout)
+        tool_envelope = json.loads(tool_result.stdout)
+
+        # Same top-level keys for found=true case
+        assert set(cmd_envelope.keys()) == set(tool_envelope.keys())
+        assert cmd_envelope['found'] is True
+        assert tool_envelope['found'] is True

tests/test_submit_message_budget.py

@@ -0,0 +1,167 @@
+"""Tests for submit_message budget-overflow atomicity (ROADMAP #162).
+
+Covers:
+- Budget overflow returns stop_reason='max_budget_reached' without mutating session
+- mutable_messages, transcript_store, permission_denials, total_usage all unchanged
+- Session persisted after overflow does not contain the overflow turn
+- Engine remains usable after overflow: subsequent in-budget call succeeds
+- Normal (non-overflow) path still commits state as before
+"""
+
+from __future__ import annotations
+
+import sys
+from pathlib import Path
+
+import pytest
+
+sys.path.insert(0, str(Path(__file__).resolve().parent.parent))
+
+from src.models import PermissionDenial, UsageSummary  # noqa: E402
+from src.port_manifest import build_port_manifest  # noqa: E402
+from src.query_engine import QueryEngineConfig, QueryEnginePort  # noqa: E402
+from src.session_store import StoredSession, load_session, save_session  # noqa: E402
+
+
+def _make_engine(max_budget_tokens: int = 10) -> QueryEnginePort:
+    engine = QueryEnginePort(manifest=build_port_manifest())
+    engine.config = QueryEngineConfig(max_budget_tokens=max_budget_tokens)
+    return engine
+
+
+class TestBudgetOverflowDoesNotMutate:
+    """The core #162 contract: overflow must leave session state untouched."""
+
+    def test_mutable_messages_unchanged_on_overflow(self) -> None:
+        engine = _make_engine(max_budget_tokens=10)
+        pre_count = len(engine.mutable_messages)
+        overflow_prompt = ' '.join(['word'] * 50)
+        result = engine.submit_message(overflow_prompt)
+        assert result.stop_reason == 'max_budget_reached'
+        assert len(engine.mutable_messages) == pre_count
+
+    def test_transcript_unchanged_on_overflow(self) -> None:
+        engine = _make_engine(max_budget_tokens=10)
+        pre_count = len(engine.transcript_store.entries)
+        overflow_prompt = ' '.join(['word'] * 50)
+        result = engine.submit_message(overflow_prompt)
+        assert result.stop_reason == 'max_budget_reached'
+        assert len(engine.transcript_store.entries) == pre_count
+
+    def test_permission_denials_unchanged_on_overflow(self) -> None:
+        engine = _make_engine(max_budget_tokens=10)
+        pre_count = len(engine.permission_denials)
+        denials = (PermissionDenial(tool_name='bash', reason='gated in test'),)
+        overflow_prompt = ' '.join(['word'] * 50)
+        result = engine.submit_message(overflow_prompt, denied_tools=denials)
+        assert result.stop_reason == 'max_budget_reached'
+        assert len(engine.permission_denials) == pre_count
+
+    def test_total_usage_unchanged_on_overflow(self) -> None:
+        engine = _make_engine(max_budget_tokens=10)
+        pre_usage = engine.total_usage
+        overflow_prompt = ' '.join(['word'] * 50)
+        result = engine.submit_message(overflow_prompt)
+        assert result.stop_reason == 'max_budget_reached'
+        assert engine.total_usage == pre_usage
+
+    def test_turn_result_reports_pre_mutation_usage(self) -> None:
+        """The TurnResult.usage must reflect session state as-if overflow never happened."""
+        engine = _make_engine(max_budget_tokens=10)
+        pre_usage = engine.total_usage
+        overflow_prompt = ' '.join(['word'] * 50)
+        result = engine.submit_message(overflow_prompt)
+        assert result.stop_reason == 'max_budget_reached'
+        assert result.usage == pre_usage
+
+
+class TestOverflowPersistence:
+    """Session persisted after overflow must not contain the overflow turn."""
+
+    def test_persisted_session_empty_when_first_turn_overflows(
+        self, tmp_path: Path, monkeypatch
+    ) -> None:
+        """When the very first call overflows, persisted session has zero messages."""
+        monkeypatch.chdir(tmp_path)
+        engine = _make_engine(max_budget_tokens=10)
+        overflow_prompt = ' '.join(['word'] * 50)
+        result = engine.submit_message(overflow_prompt)
+        assert result.stop_reason == 'max_budget_reached'
+
+        path_str = engine.persist_session()
+        path = Path(path_str)
+        assert path.exists()
+        loaded = load_session(path.stem, path.parent)
+        assert loaded.messages == (), (
+            f'overflow turn poisoned session: {loaded.messages!r}'
+        )
+
+    def test_persisted_session_retains_only_successful_turns(
+        self, tmp_path: Path, monkeypatch
+    ) -> None:
+        """A successful turn followed by an overflow persists only the successful turn."""
+        monkeypatch.chdir(tmp_path)
+        # Budget large enough for one short turn but not a second big one.
+        # Token counting is whitespace-split (see UsageSummary.add_turn),
+        # so overflow prompts must contain many whitespace-separated words.
+        engine = QueryEnginePort(manifest=build_port_manifest())
+        engine.config = QueryEngineConfig(max_budget_tokens=50)
+
+        ok = engine.submit_message('short')
+        assert ok.stop_reason == 'completed'
+        assert 'short' in engine.mutable_messages
+
+        # 500 whitespace-separated tokens — definitely over a 50-token budget
+        overflow_prompt = ' '.join(['word'] * 500)
+        overflow = engine.submit_message(overflow_prompt)
+        assert overflow.stop_reason == 'max_budget_reached'
+
+        path = Path(engine.persist_session())
+        loaded = load_session(path.stem, path.parent)
+        assert loaded.messages == ('short',), (
+            f'expected only the successful turn, got {loaded.messages!r}'
+        )
+
+
+class TestEngineUsableAfterOverflow:
+    """After overflow, engine must still be usable — overflow is rejection, not corruption."""
+
+    def test_subsequent_in_budget_call_succeeds(self) -> None:
+        """After an overflow rejection, raising the budget and retrying works."""
+        engine = _make_engine(max_budget_tokens=10)
+        overflow_prompt = ' '.join(['word'] * 100)
+        overflow = engine.submit_message(overflow_prompt)
+        assert overflow.stop_reason == 'max_budget_reached'
+
+        # Raise the budget and retry — the engine should be in a clean state
+        engine.config = QueryEngineConfig(max_budget_tokens=10_000)
+        ok = engine.submit_message('short retry')
+        assert ok.stop_reason == 'completed'
+        assert 'short retry' in engine.mutable_messages
+        # The overflow prompt should never have been recorded
+        assert overflow_prompt not in engine.mutable_messages
+
+    def test_multiple_overflow_calls_remain_idempotent(self) -> None:
+        """Repeated overflow calls must not accumulate hidden state."""
+        engine = _make_engine(max_budget_tokens=10)
+        overflow_prompt = ' '.join(['word'] * 50)
+        for _ in range(5):
+            result = engine.submit_message(overflow_prompt)
+            assert result.stop_reason == 'max_budget_reached'
+        assert len(engine.mutable_messages) == 0
+        assert len(engine.transcript_store.entries) == 0
+        assert engine.total_usage == UsageSummary()
+
+
+class TestNormalPathStillCommits:
+    """Regression guard: non-overflow path must still mutate state as before."""
+
+    def test_in_budget_turn_commits_all_state(self) -> None:
+        engine = QueryEnginePort(manifest=build_port_manifest())
+        engine.config = QueryEngineConfig(max_budget_tokens=10_000)
+        result = engine.submit_message('review MCP tool')
+        assert result.stop_reason == 'completed'
+        assert len(engine.mutable_messages) == 1
+        assert len(engine.transcript_store.entries) == 1
+        assert engine.total_usage.input_tokens > 0
+        assert engine.total_usage.output_tokens > 0

tests/test_submit_message_cancellation.py

@@ -0,0 +1,220 @@
+"""Tests for cooperative cancellation in submit_message (ROADMAP #164 Stage A).
+
+Verifies that cancel_event enables safe early termination:
+- Event set before call => immediate return with stop_reason='cancelled'
+- Event set between budget check and commit => still 'cancelled', no mutation
+- Event set after commit => not observable (honest cooperative limit)
+- Legacy callers (cancel_event=None) see zero behaviour change
+- State is untouched on cancellation: mutable_messages, transcript_store,
+  permission_denials, total_usage all preserved
+
+This closes the #161 follow-up gap filed as #164: wedged provider threads
+can no longer silently commit ghost turns after the caller observed a
+timeout.
+"""
+
+from __future__ import annotations
+
+import sys
+import threading
+from pathlib import Path
+
+sys.path.insert(0, str(Path(__file__).resolve().parent.parent))
+
+from src.models import PermissionDenial  # noqa: E402
+from src.port_manifest import build_port_manifest  # noqa: E402
+from src.query_engine import QueryEngineConfig, QueryEnginePort, TurnResult  # noqa: E402
+
+
+def _fresh_engine(**config_overrides) -> QueryEnginePort:
+    config = QueryEngineConfig(**config_overrides) if config_overrides else QueryEngineConfig()
+    return QueryEnginePort(manifest=build_port_manifest(), config=config)
+
+
+class TestCancellationBeforeCall:
+    """Event set before submit_message is invoked => immediate 'cancelled'."""
+
+    def test_pre_set_event_returns_cancelled_immediately(self) -> None:
+        engine = _fresh_engine()
+        event = threading.Event()
+        event.set()
+
+        result = engine.submit_message('hello', cancel_event=event)
+
+        assert result.stop_reason == 'cancelled'
+        assert result.prompt == 'hello'
+        # Output is empty on pre-budget cancel (no synthesis)
+        assert result.output == ''
+
+    def test_pre_set_event_preserves_mutable_messages(self) -> None:
+        engine = _fresh_engine()
+        event = threading.Event()
+        event.set()
+
+        engine.submit_message('ghost turn', cancel_event=event)
+
+        assert engine.mutable_messages == [], (
+            'cancelled turn must not appear in mutable_messages'
+        )
+
+    def test_pre_set_event_preserves_transcript_store(self) -> None:
+        engine = _fresh_engine()
+        event = threading.Event()
+        event.set()
+
+        engine.submit_message('ghost turn', cancel_event=event)
+
+        assert engine.transcript_store.entries == [], (
+            'cancelled turn must not appear in transcript_store'
+        )
+
+    def test_pre_set_event_preserves_usage_counters(self) -> None:
+        engine = _fresh_engine()
+        initial_usage = engine.total_usage
+        event = threading.Event()
+        event.set()
+
+        engine.submit_message('expensive prompt ' * 100, cancel_event=event)
+
+        assert engine.total_usage == initial_usage, (
+            'cancelled turn must not increment token counters'
+        )
+
+    def test_pre_set_event_preserves_permission_denials(self) -> None:
+        engine = _fresh_engine()
+        event = threading.Event()
+        event.set()
+
+        denials = (PermissionDenial(tool_name='BashTool', reason='destructive'),)
+        engine.submit_message('run bash ls', denied_tools=denials, cancel_event=event)
+
+        assert engine.permission_denials == [], (
+            'cancelled turn must not extend permission_denials'
+        )
+
+
+class TestCancellationAfterBudgetCheck:
+    """Event set between budget projection and commit => 'cancelled', state intact.
+
+    This simulates the realistic racy case: engine starts computing output,
+    caller hits deadline, sets event. Engine observes at post-budget checkpoint
+    and returns cleanly.
+    """
+
+    def test_post_budget_cancel_returns_cancelled(self) -> None:
+        engine = _fresh_engine()
+        event = threading.Event()
+
+        # Patch: set the event after projection but before mutation. We do this
+        # by wrapping _format_output (called mid-submit) to set the event.
+        original_format = engine._format_output
+
+        def _set_then_format(*args, **kwargs):
+            result = original_format(*args, **kwargs)
+            event.set()  # trigger cancel right after output is built
+            return result
+
+        engine._format_output = _set_then_format  # type: ignore[method-assign]
+
+        result = engine.submit_message('hello', cancel_event=event)
+
+        assert result.stop_reason == 'cancelled'
+        # Output IS built here (we're past the pre-budget checkpoint), so it's
+        # not empty. The contract is about *state*, not output synthesis.
+        assert result.output != ''
+        # Critical: state still unchanged
+        assert engine.mutable_messages == []
+        assert engine.transcript_store.entries == []
+
+
+class TestCancellationAfterCommit:
+    """Event set after commit is not observable \u2014 honest cooperative limit."""
+
+    def test_post_commit_cancel_is_not_observable(self) -> None:
+        engine = _fresh_engine()
+        event = threading.Event()
+
+        # Event only set *after* submit_message returns. The first call has
+        # already committed before the event is set.
+        result = engine.submit_message('hello', cancel_event=event)
+        event.set()  # too late
+
+        assert result.stop_reason == 'completed', (
+            'cancel set after commit must not retroactively invalidate the turn'
+        )
+        assert engine.mutable_messages == ['hello']
+
+    def test_next_call_observes_cancel(self) -> None:
+        """The cancel_event persists \u2014 the next call on the same engine sees it."""
+        engine = _fresh_engine()
+        event = threading.Event()
+
+        engine.submit_message('first', cancel_event=event)
+        assert engine.mutable_messages == ['first']
+
+        event.set()
+        # Next call observes the cancel at entry
+        result = engine.submit_message('second', cancel_event=event)
+
+        assert result.stop_reason == 'cancelled'
+        # 'second' must NOT have been committed
+        assert engine.mutable_messages == ['first']
+
+
+class TestLegacyCallersUnchanged:
+    """cancel_event=None (default) => zero behaviour change from pre-#164."""
+
+    def test_no_event_submits_normally(self) -> None:
+        engine = _fresh_engine()
+        result = engine.submit_message('hello')
+
+        assert result.stop_reason == 'completed'
+        assert engine.mutable_messages == ['hello']
+
+    def test_no_event_with_budget_overflow_still_rejects_atomically(self) -> None:
+        """#162 atomicity contract survives when cancel_event is absent."""
+        engine = _fresh_engine(max_budget_tokens=1)
+        words = ' '.join(['word'] * 100)
+
+        result = engine.submit_message(words)  # no cancel_event
+
+        assert result.stop_reason == 'max_budget_reached'
+        assert engine.mutable_messages == []
+
+    def test_no_event_respects_max_turns(self) -> None:
+        """max_turns_reached contract survives when cancel_event is absent."""
+        engine = _fresh_engine(max_turns=1)
+        engine.submit_message('first')
+        result = engine.submit_message('second')  # no cancel_event
+
+        assert result.stop_reason == 'max_turns_reached'
+        assert engine.mutable_messages == ['first']
+
+
+class TestCancellationVsOtherStopReasons:
+    """cancel_event has a defined precedence relative to budget/turns."""
+
+    def test_cancel_precedes_max_turns_check(self) -> None:
+        """If cancel is set when capacity is also full, cancel wins (clearer signal)."""
+        engine = _fresh_engine(max_turns=0)  # immediately full
+        event = threading.Event()
+        event.set()
+
+        result = engine.submit_message('hello', cancel_event=event)
+
+        # cancel_event check is the very first thing in submit_message,
+        # so it fires before the max_turns check even sees capacity
+        assert result.stop_reason == 'cancelled'
+
+    def test_cancel_does_not_override_commit(self) -> None:
+        """Completed turn with late cancel still reports 'completed' \u2014 the
+        turn already succeeded; we don't lie about it."""
+        engine = _fresh_engine()
+        event = threading.Event()
+
+        # Event gets set after the mutation is done \u2014 submit_message doesn't
+        # re-check after commit
+        result = engine.submit_message('hello', cancel_event=event)
+        event.set()
+
+        assert result.stop_reason == 'completed'